View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_low_18 (Length: 346)
Name: NF20409_low_18
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 43079166 - 43079346
Alignment:
| Q |
18 |
gaataagggcttgagatcgataagtttggtccactaacgtgaggaacctaattaagctctcaatcaacaacactttgtttatactttttacaagagggaa |
117 |
Q |
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| T |
43079166 |
gaataagggcttgagatcgataagtttggtccactaacgtgaggaacctaattaagctctcaatcaacaacactttgtttattctttttacaagagggaa |
43079265 |
T |
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| Q |
118 |
taatatcatttcaataataaagatgtggt--cactctaataagattgtaaacaattttattggtttgtcttgtaatgaact |
196 |
Q |
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| T |
43079266 |
taatatcatttcaataataaagatgtggtcacactctaatacgattgtgaacaattttattggtttgtcttgtaatgaact |
43079346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 192 - 346
Target Start/End: Original strand, 43082468 - 43082625
Alignment:
| Q |
192 |
gaactcaacatagagtttat---tcacggaaaagtagtaatcctaaggccactccaacatcaacatcaacataagttagttactggtgaatacttgtcaa |
288 |
Q |
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| T |
43082468 |
gaactcaacataaagtttattattcacggaaaagtagtaatcctaaggcccctccaacatcaacatcaacatcagttagttactggtgaatacttgtcaa |
43082567 |
T |
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| Q |
289 |
tttgagctaggacaatgtgactttgatcatctctagcacagacacaatgtagtaggtc |
346 |
Q |
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| T |
43082568 |
tttgagctaggacaatgcgactttgatcatctctagcacagacacaatgtagtaggtc |
43082625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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