View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_low_20 (Length: 286)
Name: NF20409_low_20
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 35210339 - 35210071
Alignment:
| Q |
1 |
catatacacatccccttcattcatttctctgaaatctcatcttatgaaatatactctaaatattttcaatttattgcatcataatctctttcaaaatcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35210339 |
catatacacatccccttcattcatttctctgaaatctcatcttatgaaatatactctaaatattttcaatttattgcgtcataatctctttcaaaatcaa |
35210240 |
T |
|
| Q |
101 |
ccttcaataataacactcatccctctttcattttgccaaatcgattatttcattcacaagtaacgctccttctaaaagttgtctatcatgaatggtttgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35210239 |
ccttcaataataacactcatccctctttcattttggcaaatcgaatatttcattcacaagtaacgctccttctaaaagttgtctatcatgaatagtttgg |
35210140 |
T |
|
| Q |
201 |
ttttcagaaatcatcgtctcttgaaataccttcaatttatttgccaacatttatataaatgaaggcaat |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35210139 |
ttttcagaaatcatcgtctcttgaaataccttcaatttattcgccaacatttatataaatgaaggcaat |
35210071 |
T |
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