View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_low_25 (Length: 238)
Name: NF20409_low_25
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_low_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 40946044 - 40945824
Alignment:
| Q |
18 |
atggtttcaaatataagaaagaatatggtgatacaataatttggtttagataggccttgggttgtagaaaaacttttgagtaatatagttaagcatacga |
117 |
Q |
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| T |
40946044 |
atggtttcaaatataagatagaatatggtgatacaataatttggtttagataggccttgggttgtagaaaaacttttgagtaatattattaaggatacga |
40945945 |
T |
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| Q |
118 |
cacaagaagagttggaattaaaaatcaaagatttttgggtggataatatttgtgtggtttctgagcttcgtacttttgttgacgtgaaaatctttccttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40945944 |
cacaagaagagttggaattaaaaatcaaagatttttgggtggataatatttgtgtggtttctaagcttcgtacttttgttgacgtgaaaatctttccttc |
40945845 |
T |
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| Q |
218 |
caacaaatgaatttgagagat |
238 |
Q |
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||||||||||||||||||||| |
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| T |
40945844 |
caacaaatgaatttgagagat |
40945824 |
T |
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