View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_low_28 (Length: 231)
Name: NF20409_low_28
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 37135981 - 37136173
Alignment:
| Q |
21 |
atcaggtgggtcatttgcatacttaagagtagaattgggagactttgtggccttcatagctgctggaaacatactccttgaatatgttataggagcagca |
120 |
Q |
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| T |
37135981 |
atcaggtgggtcatttgcatacttaagagtagaattgggagactttgtggccttcatagctgctggaaacatactccttgaatatgttataggagcagca |
37136080 |
T |
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| Q |
121 |
gccgtagctcgatcatggacctcctattttgccaccctctgcaacaaaaatcctaacgattttcgtataatagtccaaaatatgagccctgat |
213 |
Q |
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| T |
37136081 |
gccgtagctcgatcatggacctcctattttgccaccctctgcaacaaaaatcctaacgattttcgtataatattccacaatatgaaccctgat |
37136173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 37120271 - 37120069
Alignment:
| Q |
22 |
tcaggtgggtcatttgcatacttaagagtagaattgggagactttgtggccttcatagctgctggaaacatactccttgaatatgttataggagcagcag |
121 |
Q |
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| T |
37120271 |
tcaggtgggtcatttgcttacttgagagtagaaatgggagattttgttgccttcatagctgccggaaacatcctccttgaatatgtcattggcaacgcgg |
37120172 |
T |
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| Q |
122 |
ccgtagctcgatcatggacctcctattttgccaccctctgcaacaaaaatcctaacgattttcgtataatagtccaaaatatgagccctgatgatgtcca |
221 |
Q |
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| T |
37120171 |
cggtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaatcctgattatggcca |
37120072 |
T |
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| Q |
222 |
tct |
224 |
Q |
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| T |
37120071 |
tct |
37120069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 37112016 - 37111826
Alignment:
| Q |
22 |
tcaggtgggtcatttgcatacttaagagtagaattgggagactttgtggccttcatagctgctggaaacatactccttgaatatgttataggagcagcag |
121 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||| ||| |||| ||| | ||||| || | |
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| T |
37112016 |
tcaggtgggtcatttgcttacttaagagtagaattgggagattttgttgcctttatagctgccggaaacatcctctttgagtatatcataggcaacgccg |
37111917 |
T |
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| Q |
122 |
ccgtagctcgatcatggacctcctattttgccaccctctgcaacaaaaatcctaacgattttcgtataatagtccaaaatatgagccctga |
212 |
Q |
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| T |
37111916 |
cggtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaaccctga |
37111826 |
T |
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