View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20409_low_29 (Length: 231)
Name: NF20409_low_29
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_low_29 |
 | |
|
| [»] scaffold0237 (1 HSPs) |
| | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
| [»] scaffold0573 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 38)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 24886434 - 24886218
Alignment:
| Q |
1 |
agatatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24886434 |
agatatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctat |
24886335 |
T |
|
| Q |
101 |
aatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24886334 |
aatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatg |
24886235 |
T |
|
| Q |
201 |
gctgcattccagatgct |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
24886234 |
gctgcattccagatgct |
24886218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 24730986 - 24731202
Alignment:
| Q |
1 |
agatatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctat |
100 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24730986 |
agatatgtacacatacactgttcttatcaagggattgtgccaaagtggaaaactggaggatgcacaaaaagtttttgaagatcttttggtcaaaggctat |
24731085 |
T |
|
| Q |
101 |
aatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatg |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||| | | |||||||||||||||||| |||||||||||||||| |
|
|
| T |
24731086 |
aatctagatgtctatacatataccgttatgatccaagggttttgtgtcaagggcttgtttgatgcagcgttggccttgctgtcaaaaatggaagacaatg |
24731185 |
T |
|
| Q |
201 |
gctgcattccagatgct |
217 |
Q |
| |
|
| ||||||||| ||||| |
|
|
| T |
24731186 |
gatgcattccaaatgct |
24731202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 29882566 - 29882782
Alignment:
| Q |
1 |
agatatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctat |
100 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29882566 |
agatatgaacacatacactattcttgtcaagggattgtgccgaagtggaaaattggaggatgcacgaaaagtttttgaagatcttttggtcaaaggctac |
29882665 |
T |
|
| Q |
101 |
aatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatg |
200 |
Q |
| |
|
||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
29882666 |
aatcttgatgtctatgcatataccgttatgatccaagggttttgtgacaagggcttgtttgacgaagcgttggccttgctgtcaaaaatggaagagaatg |
29882765 |
T |
|
| Q |
201 |
gctgcattccagatgct |
217 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
29882766 |
gatgcattccagatgct |
29882782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 29909722 - 29909938
Alignment:
| Q |
1 |
agatatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctat |
100 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29909722 |
agatatgaacacatacactattcttgtcaagggattgtgccgaagtggaaaattggaggatgcacgaaaagtttttgaagatcttttggtcaaaggctac |
29909821 |
T |
|
| Q |
101 |
aatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatg |
200 |
Q |
| |
|
||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
29909822 |
aatcttgatgtctatgcatataccgttatgatccaagggttttgtgacaagggcttgtttgacgaagcgttggccttgctgtcaaaaatggaagagaatg |
29909921 |
T |
|
| Q |
201 |
gctgcattccagatgct |
217 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
29909922 |
gatgcattccagatgct |
29909938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 29357845 - 29357631
Alignment:
| Q |
3 |
atatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataa |
102 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| || ||||||||||||||||||||||||||| |||| |
|
|
| T |
29357845 |
atatgtacacatacactattcttatcaagggattgtgccaaagtgggaaattggaggatgcacggaaggtttttgaagatcttttggtcaaaggccataa |
29357746 |
T |
|
| Q |
103 |
tctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggc |
202 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| | ||||||||| ||||||| || |||||||||||||||||| |
|
|
| T |
29357745 |
tctaaatgtctatacatatactgttatgatccaaggcttttgtgacaagggcttgtttgatgaagcgttgaccttgctatcaaaaatggaagacaatggc |
29357646 |
T |
|
| Q |
203 |
tgcattccagatgct |
217 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
29357645 |
tgcattccaaatgct |
29357631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 29912103 - 29912319
Alignment:
| Q |
1 |
agatatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctat |
100 |
Q |
| |
|
||||||| |||||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29912103 |
agatatgaacacatacaccattcttgtcaagggattgtgccaaagtggaaaattggaggatgcacgaaaagtttttgaagatcttctggtcaaaggctac |
29912202 |
T |
|
| Q |
101 |
aatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatg |
200 |
Q |
| |
|
|| || ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
29912203 |
aaccttgatgtctatgcatataccgttatgatccaagggttttgtgacaagggcttgtttgacgaagcgttggccttgctgtcaaaaatggaagagaatg |
29912302 |
T |
|
| Q |
201 |
gctgcattccagatgct |
217 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
29912303 |
gatgcattccagatgct |
29912319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 29914128 - 29914339
Alignment:
| Q |
6 |
tgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataatct |
105 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29914128 |
tgtacacatacactattcttgtcaagggattgtgccgaagtggaaaattggaggatgcacaaaaagtttttgaagatcttttggtcaaaggctacaatct |
29914227 |
T |
|
| Q |
106 |
agatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggctgc |
205 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||||||||| ||||| ||| |
|
|
| T |
29914228 |
tgatgtctatgcatataccgttatgatccaagggttttgtgacaaggacttgtttgatgaagcgttggccttgctgtcaaaaatggaagagaatggatgc |
29914327 |
T |
|
| Q |
206 |
attccagatgct |
217 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29914328 |
attccagatgct |
29914339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 29116394 - 29116608
Alignment:
| Q |
3 |
atatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataa |
102 |
Q |
| |
|
||||||||||||||| |||| ||||||| ||| ||||||||||||||||| || |||||||||| ||||||||||||| |||||||||||||||| |||| |
|
|
| T |
29116394 |
atatgtacacatacagtattcttatcaaaggactgtgccaaagtggaaaactggaggatgcacgtaaagtttttgaaggtcttttggtcaaaggccataa |
29116493 |
T |
|
| Q |
103 |
tctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggc |
202 |
Q |
| |
|
|||| ||||| |||||||||| ||||||||||||||||||||| | |||| |||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29116494 |
tctaaatgtcgatacatataccattatgatccaagggttttgtgtcgagggcttgtttaatgaagcgttggccttgctgtcaaaaatggaagacaatggc |
29116593 |
T |
|
| Q |
203 |
tgcattccagatgct |
217 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29116594 |
tgcattccagatgct |
29116608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 29099474 - 29099690
Alignment:
| Q |
1 |
agatatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctat |
100 |
Q |
| |
|
|||||| | |||||||| |||| ||||||| ||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29099474 |
agatatatccacatacagtattcttatcaaaggactgtgccaaagtggaaaactggaggatgcacgtaaagtttttgaagatcttttggtcaaaggctac |
29099573 |
T |
|
| Q |
101 |
aatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatg |
200 |
Q |
| |
|
||||| ||||||||| ||||||| ||||||||||||||||||||| | |||| |||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29099574 |
aatcttgatgtctatgcatataccattatgatccaagggttttgtgtcgagggcttgtttaatgaagcgttggccttgctgtcaaaaatggaagacaatg |
29099673 |
T |
|
| Q |
201 |
gctgcattccagatgct |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29099674 |
gctgcattccagatgct |
29099690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 29078661 - 29078874
Alignment:
| Q |
4 |
tatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataat |
103 |
Q |
| |
|
|||| |||||||||||||| |||| | ||||||| ||||||||||| || |||||||||| |||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
29078661 |
tatgcacacatacactattcttattgattgattgtgtaaaagtggaaaactggaggatgcacgtaaagtttttgaagatcttttcgtcaaaggctacaat |
29078760 |
T |
|
| Q |
104 |
ctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggct |
203 |
Q |
| |
|
|| ||||||||| ||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29078761 |
cttgatgtctatgcatataccgttatgatccaagggttttgtgtcaagggcttgtttaatgaagcgttggccttgctgtcaaaaatggaagacaatggct |
29078860 |
T |
|
| Q |
204 |
gcattccagatgct |
217 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29078861 |
gcattccagatgct |
29078874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 24890114 - 24889898
Alignment:
| Q |
1 |
agatatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctat |
100 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| ||||||||||||||| | ||||||| | ||| |||||||||||||||||||||||||||||| |
|
|
| T |
24890114 |
agatatgtacacatacaccattcttatcaagggactgtgccaaagtggaaggctagaggatgcgcaaaacgtttttgaagatcttttggtcaaaggctat |
24890015 |
T |
|
| Q |
101 |
aatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatg |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| | |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
24890014 |
aatctagatgtctatgcatatactgttatgatccaagggttttgtgacaagggcttctttgataaagcattggccttgctgtcaaaaatggaagacaatg |
24889915 |
T |
|
| Q |
201 |
gctgcattccagatgct |
217 |
Q |
| |
|
| ||||||||| ||||| |
|
|
| T |
24889914 |
gttgcattccaaatgct |
24889898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 29073897 - 29074110
Alignment:
| Q |
4 |
tatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataat |
103 |
Q |
| |
|
|||| |||||||||||||| |||| | ||||||| ||||||||||| || |||||||||| |||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
29073897 |
tatgcacacatacactattcttattgattgattgtgtaaaagtggaaaactggaggatgcacgtaaagtttttgaagatcttttcgtcaaaggctacaat |
29073996 |
T |
|
| Q |
104 |
ctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggct |
203 |
Q |
| |
|
|| ||||||||| ||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29073997 |
cttgatgtctatgcatataccgttatgatccaagggttttgtgtcaagggcttgtttaatgaagcgttggccttgctgtcaaaaatggaagacaatggcc |
29074096 |
T |
|
| Q |
204 |
gcattccagatgct |
217 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29074097 |
gcattccagatgct |
29074110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 29106470 - 29106683
Alignment:
| Q |
4 |
tatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataat |
103 |
Q |
| |
|
|||| |||||||||||||| |||| | ||||||| ||||||||||| || |||||||||| |||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
29106470 |
tatgcacacatacactattcttattgattgattgtgtaaaagtggaaaactggaggatgcacgtaaagtttttgaagatcttttcgtcaaaggctacaat |
29106569 |
T |
|
| Q |
104 |
ctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggct |
203 |
Q |
| |
|
|| ||||||||| ||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29106570 |
cttgatgtctatgcatataccgttatgatccaagggttttgtgtcaagggcttgtttaatgaagcgttggccttgctgtcaaaaatggaagacaatggcc |
29106669 |
T |
|
| Q |
204 |
gcattccagatgct |
217 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29106670 |
gcattccagatgct |
29106683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 29903379 - 29903584
Alignment:
| Q |
3 |
atatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataa |
102 |
Q |
| |
|
||||| |||||||||| ||| || ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
29903379 |
atatgaacacatacaccattcttgtcaagggattgtgccgaagtggaaaattggaggatgcacgaaaagtttttgaagatctt---------ggctacaa |
29903469 |
T |
|
| Q |
103 |
tctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggc |
202 |
Q |
| |
|
||| ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| | |||| ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
29903470 |
tcttgatgtctatgcatataccgttatgatccaagggttttgtgacaagggcttgtttgatgaagtgttggccttgctgtcaaaaatggaagagaatgga |
29903569 |
T |
|
| Q |
203 |
tgcattccagatgct |
217 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29903570 |
tgcattccagatgct |
29903584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 30999829 - 30999650
Alignment:
| Q |
36 |
tgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataatctagatgtctatacatatactgttatgatcca |
135 |
Q |
| |
|
||||||||||||||| | ||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30999829 |
tgtgccaaagtggaaggctagaggatgcgcaaaaagtttttgaagatgttttggtcaaaggctataatctagatgtctatacatag--tgttatgatcca |
30999732 |
T |
|
| Q |
136 |
agggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggctgcattccagatgct |
217 |
Q |
| |
|
|||||||||| ||| ||| |||||| | |||| |||||||||| |||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
30999731 |
agggttttgttacacgggcttgtttgatgaagtgttggccttgttgtcaaaaatggaagacaatggttgcattccaaatgct |
30999650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 29348466 - 29348250
Alignment:
| Q |
1 |
agatatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctat |
100 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||||||| || |||||| | | |||||||||| || ||||||| |||||||| ||||| |||||| |
|
|
| T |
29348466 |
agatatgtacacatacactattcttattgatggattgtgtaaaggtggaagactaaaggatgcacagaatatttttgaggatcttttagtcaagggctat |
29348367 |
T |
|
| Q |
101 |
aatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatg |
200 |
Q |
| |
|
||| || ||||||||||||||| |||||||| ||||||||||||||||| | |||||| | |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
29348366 |
aatataactgtctatacatataccgttatgattcaagggttttgtgacaacgacttgtttgacaaagcattggccttgctgtcaaaaatggaagacaatg |
29348267 |
T |
|
| Q |
201 |
gctgcattccagatgct |
217 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
29348266 |
gctgcattccaaatgct |
29348250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 80 - 217
Target Start/End: Original strand, 29930276 - 29930415
Alignment:
| Q |
80 |
gatcttttggtcaaaggctata--atctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggcctt |
177 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| ||| ||||| || ||||||||| |||| |
|
|
| T |
29930276 |
gatcttttggtcaaaggctatataatctaaatgtctatacatataccgttatgatccaagggttttgtgacatgggcttgttcaacgaagcgttgacctt |
29930375 |
T |
|
| Q |
178 |
gctgtccaaaatggaagacaatggctgcattccagatgct |
217 |
Q |
| |
|
||| || |||||||| |||||||||||||||||| ||||| |
|
|
| T |
29930376 |
gctatcaaaaatggacgacaatggctgcattccaaatgct |
29930415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 24271830 - 24271616
Alignment:
| Q |
3 |
atatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataa |
102 |
Q |
| |
|
|||||| ||||||||||||| |||| | ||||||||| || |||||| | | |||||||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
24271830 |
atatgttcacatacactattcttattgatggattgtgcaaaggtggaagactagaggatgcacggaatatttttgaggatcttttggtcaaaggctataa |
24271731 |
T |
|
| Q |
103 |
tctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggc |
202 |
Q |
| |
|
| || |||| | |||||||| ||||||||||| ||||||||| ||||||| |||||| | ||||| || | ||| |||| |||||| |||||||| | |
|
|
| T |
24271730 |
tataactgtcaacacatataccgttatgatccatgggttttgtaacaagggcttgtttgatgaagcaatgactttgttgtcaaaaatgaaagacaattgt |
24271631 |
T |
|
| Q |
203 |
tgcattccagatgct |
217 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
24271630 |
tgcattccaaatgct |
24271616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 24263618 - 24263408
Alignment:
| Q |
3 |
atatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataa |
102 |
Q |
| |
|
|||||||||||||||||||| |||| | |||||||| || |||||| | | |||||||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
24263618 |
atatgtacacatacactattcttattgatggattgtgtaaaggtggaagactagaggatgcacggaatatttttgaggatcttttggtcaaaggctataa |
24263519 |
T |
|
| Q |
103 |
tctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggc |
202 |
Q |
| |
|
|||| ||| | ||||||||||||||||| |||||||||||| | | || |||||| | ||||| ||| | ||| |||| |||||| |||||||| | |
|
|
| T |
24263518 |
tctaaccgtcaacacatatactgttatgattcaagggttttgtagccatggcttgtttgatgaagcattgtctttgttgtcaaaaatgaaagacaatagt |
24263419 |
T |
|
| Q |
203 |
tgcattccaga |
213 |
Q |
| |
|
||||||||||| |
|
|
| T |
24263418 |
tgcattccaga |
24263408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 29894686 - 29894900
Alignment:
| Q |
3 |
atatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataa |
102 |
Q |
| |
|
|||||||||||||||||||| |||| | ||| |||| || |||||| | | | ||||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
29894686 |
atatgtacacatacactattcttattgatggactgtgtaaaggtggaagactagaagatgcacataatatttttgaggatcttttggtcaaaggctataa |
29894785 |
T |
|
| Q |
103 |
tctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggc |
202 |
Q |
| |
|
| || |||| | |||||||| ||||||||||| ||||||||| ||||||| |||||| | ||||| ||| | ||| |||| |||||| |||||||| | |
|
|
| T |
29894786 |
tataactgtcaacacatataccgttatgatccatgggttttgtaacaagggcttgtttgatgaagcattgactttgttgtcaaaaatgaaagacaatagt |
29894885 |
T |
|
| Q |
203 |
tgcattccagatgct |
217 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29894886 |
tgcattccagatgct |
29894900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 29866782 - 29866995
Alignment:
| Q |
3 |
atatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataa |
102 |
Q |
| |
|
|||||||||||||||||||| |||| | ||| |||| || |||||| | | ||||||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
29866782 |
atatgtacacatacactattcttattgatggactgtgtaaaggtggaagactagaggatgcacataatatttttgaggatcttttggtcaaaggctataa |
29866881 |
T |
|
| Q |
103 |
tctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggc |
202 |
Q |
| |
|
| || |||| | |||||||| ||||||||||| ||||||||| ||||||| |||||| | ||||| ||||| ||| |||| |||||| |||||||| | |
|
|
| T |
29866882 |
tataactgtcaacacatataccgttatgatccatgggttttgtaacaagggcttgtttgatgaagcattggctttgttgtcaaaaatgaaagacaatagt |
29866981 |
T |
|
| Q |
203 |
tgcattccagatgc |
216 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
29866982 |
tgctttccaaatgc |
29866995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 29887430 - 29887643
Alignment:
| Q |
3 |
atatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataa |
102 |
Q |
| |
|
|||||||||||||||||||| |||| | ||| |||| || |||||| | | ||||||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
29887430 |
atatgtacacatacactattcttattgatggactgtgtaaaggtggaagactagaggatgcacataatatttttgaggatcttttggtcaaaggctataa |
29887529 |
T |
|
| Q |
103 |
tctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggc |
202 |
Q |
| |
|
| || |||| | |||||||| ||||||||||| ||||||||| ||||||| |||||| | ||||| ||||| ||| |||| |||||| |||||||| | |
|
|
| T |
29887530 |
tataactgtcaacacatataccgttatgatccatgggttttgtaacaagggcttgtttgatgaagcattggctttgttgtcaaaaatgaaagacaatagt |
29887629 |
T |
|
| Q |
203 |
tgcattccagatgc |
216 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
29887630 |
tgctttccaaatgc |
29887643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 213
Target Start/End: Complemental strand, 24258545 - 24258410
Alignment:
| Q |
78 |
aagatcttttggtcaaaggctataatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggcctt |
177 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||| ||||||||||||||||||| |||||||||||| | | || |||||| | ||| | ||||| || |
|
|
| T |
24258545 |
aagatcttttggtcaaaggctacattctagatgtcaatacatatactgttatgattcaagggttttgtagccatggattgtttgacgaatcattggcttt |
24258446 |
T |
|
| Q |
178 |
gctgtccaaaatggaagacaatggctgcattccaga |
213 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
24258445 |
gctgtcaaaaatggaagtaaatggttgcattccaga |
24258410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 29211259 - 29211045
Alignment:
| Q |
3 |
atatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataa |
102 |
Q |
| |
|
||||| |||||||||||||| |||| | |||||||| |||||||||| || |||||||||| || ||||||| |||||||| ||||| |||||| | |
|
|
| T |
29211259 |
atatgcacacatacactattcttattgatggattgtgtacaagtggaaaactggaggatgcacggaatatttttgaggatcttttagtcaagggctatga |
29211160 |
T |
|
| Q |
103 |
tctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggc |
202 |
Q |
| |
|
| || |||| ||||||| |||||| || | ||||||||| | ||||| |||||| | ||||| | |||||||||||| ||||||||||| ||||| |
|
|
| T |
29211159 |
tataactgtcgtcacatatatcgttatgttctatgggttttgtaagaagggcttgtttgatgaagcatcggccttgctgtcaaaaatggaagagaatgga |
29211060 |
T |
|
| Q |
203 |
tgcattccagatgct |
217 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29211059 |
tgcattccagatgct |
29211045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 29366233 - 29366079
Alignment:
| Q |
57 |
aggatgcacgaaaagtttttgaagatcttttggtcaaaggctataatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggttt |
156 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||| | |||||||||| ||| |||||||| |||||| |||||||||||| | | || || |
|
|
| T |
29366233 |
aggatgcacggatagtttttgaagatcttttggtcaaaggctacattctagatgtcaatatatatactgctatgattcaagggttttgtagccatggctt |
29366134 |
T |
|
| Q |
157 |
gtttaaggaagcgttggccttgctgtccaaaatggaagacaatggctgcattcca |
211 |
Q |
| |
|
|||| | ||| | |||| ||| |||| ||||||||||| ||||| ||||||||| |
|
|
| T |
29366133 |
gtttgatgaatcattggatttgttgtcaaaaatggaagaaaatggttgcattcca |
29366079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 29835348 - 29835561
Alignment:
| Q |
3 |
atatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataa |
102 |
Q |
| |
|
|||||||||||||||||||| |||| | ||| |||| || |||||| | | | ||||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
29835348 |
atatgtacacatacactattcttattgatggactgtgtaaaggtggaagactagatgatgcacataatatttttgaggatcttttggtcaaaggctataa |
29835447 |
T |
|
| Q |
103 |
tctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggc |
202 |
Q |
| |
|
| || |||| | |||||||| ||||||||||| ||||||||| ||||||| |||||| | ||||| ||||| ||| |||| |||||| |||||||| | |
|
|
| T |
29835448 |
tataactgtcaacacatataccgttatgatccatgggttttgtaacaagggcttgtttgatgaagcattggctttgttgtcaaaaatgaaagacaatagt |
29835547 |
T |
|
| Q |
203 |
tgcattccagatgc |
216 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
29835548 |
tgctttccaaatgc |
29835561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 213
Target Start/End: Original strand, 29929409 - 29929616
Alignment:
| Q |
6 |
tgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataatct |
105 |
Q |
| |
|
||||||||||||||||| |||| | |||||||| || |||||| | | ||||||||||| || ||||||| |||||||| ||||| ||||||||| | |
|
|
| T |
29929409 |
tgtacacatacactattcttattgacggattgtgtaaaggtggaagactaaaggatgcacggaatatttttgaggatcttttagtcaagggctataatat |
29929508 |
T |
|
| Q |
106 |
agatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggctgc |
205 |
Q |
| |
|
| |||| | |||||||| |||||||| |||||||||||| | | || ||||| | ||| | ||||| |||||||| ||||||||||| ||||| ||| |
|
|
| T |
29929509 |
aactgtcaacacatataccgttatgattcaagggttttgtagccatggcttgttggatgaatcattggctttgctgtcaaaaatggaagaaaatggttgc |
29929608 |
T |
|
| Q |
206 |
attccaga |
213 |
Q |
| |
|
|||||||| |
|
|
| T |
29929609 |
attccaga |
29929616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 30061807 - 30061690
Alignment:
| Q |
57 |
aggatgcacgaaaagtttttgaagatcttttggtcaaaggctataatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggttt |
156 |
Q |
| |
|
||||||| |||||||||||||||| | |||||||||||||||| ||||| ||||| ||| ||||| | ||||||||||| ||||||||| |||| ||||| |
|
|
| T |
30061807 |
aggatgcccgaaaagtttttgaagttattttggtcaaaggctacaatcttgatgtgtatgcatatgccgttatgatccatgggttttgtaacaatggttt |
30061708 |
T |
|
| Q |
157 |
gtttaaggaagcgttggc |
174 |
Q |
| |
|
|||| | ||||| ||||| |
|
|
| T |
30061707 |
gtttgatgaagccttggc |
30061690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 28926413 - 28926205
Alignment:
| Q |
3 |
atatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataa |
102 |
Q |
| |
|
|||||||||||||||||||| |||| || ||| |||| || |||||| | | ||||||||| ||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
28926413 |
atatgtacacatacactattcttattaatggactgtgtaaaggtggaagaccggaggatgcacaaaatatttttgaggatcttttggtcaaaggttataa |
28926314 |
T |
|
| Q |
103 |
tctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggc |
202 |
Q |
| |
|
| || |||| | |||||||| ||||||||||| | ||||||| |||| || ||||| ||||| ||||| || |||| ||||||||||| ||||| |
|
|
| T |
28926313 |
tataaatgtaaacacatataccgttatgatccatgtgttttgtaacaacggcatgtttggtgaagcattggctatgttgtcaaaaatggaagaaaatggt |
28926214 |
T |
|
| Q |
203 |
tgcattcca |
211 |
Q |
| |
|
||||||||| |
|
|
| T |
28926213 |
tgcattcca |
28926205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 29889866 - 29890068
Alignment:
| Q |
6 |
tgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataatct |
105 |
Q |
| |
|
|||| |||||||||||| |||| | ||||||||| || |||||| | | ||||||||||| || ||||||| |||||||| ||||| ||||||||| | |
|
|
| T |
29889866 |
tgtaaacatacactattcttattgatggattgtgcaaaggtggaagactaaaggatgcacggaatatttttgaggatcttttagtcaagggctataatgt |
29889965 |
T |
|
| Q |
106 |
agatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggctgc |
205 |
Q |
| |
|
| ||| | |||||||| |||||||| |||||||||||| | | || |||||| | ||| | ||||| |||||||| ||||||||||| ||||| ||| |
|
|
| T |
29889966 |
aactgttaacacatataccgttatgattcaagggttttgtagccatggcttgtttgatgaatcattggctttgctgtcaaaaatggaagaaaatggttgc |
29890065 |
T |
|
| Q |
206 |
att |
208 |
Q |
| |
|
||| |
|
|
| T |
29890066 |
att |
29890068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 29898260 - 29898414
Alignment:
| Q |
57 |
aggatgcacgaaaagtttttgaagatcttttggtcaaaggctataatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggttt |
156 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||||||||||| || |||| | || ||||| |||||||| |||||||||||| | | || || |
|
|
| T |
29898260 |
aggatgcacggaatatttttgaggatcttttggtcaaaggctataatataactgtcaacacctataccgttatgattcaagggttttgtagctatggctt |
29898359 |
T |
|
| Q |
157 |
gtttaaggaagcgttggccttgctgtccaaaatggaagacaatggctgcattcca |
211 |
Q |
| |
|
|||| | ||| | ||||| |||||| | ||||||||||| ||||| ||||||||| |
|
|
| T |
29898360 |
gtttgatgaatcattggctttgctgccaaaaatggaagaaaatggttgcattcca |
29898414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 213
Target Start/End: Original strand, 29946623 - 29946780
Alignment:
| Q |
56 |
aaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtt |
155 |
Q |
| |
|
||||||||||| || ||||||||| |||||||||||||||||| | ||| |||| ||||||||||| |||||||||| ||||||||| |||||| | |
|
|
| T |
29946623 |
aaggatgcacggaaggtttttgaatatcttttggtcaaaggctgcagtcttgatgcatatacatataccattatgatccatgggttttgtagcaagggct |
29946722 |
T |
|
| Q |
156 |
tgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggctgcattccaga |
213 |
Q |
| |
|
||||| ||||| || |||||||||| |||||| || | || ||||||||||||| |
|
|
| T |
29946723 |
tgtttggtgaagcattcaccttgctgtcaaaaatgaaataatatagctgcattccaga |
29946780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 30126918 - 30126713
Alignment:
| Q |
6 |
tgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataatct |
105 |
Q |
| |
|
||||||||||||||||| |||| | |||||||| || ||| || | | ||||||||||||| | ||| | |||||||||||||||||||||||| | |
|
|
| T |
30126918 |
tgtacacatacactattcttattgatggattgtgtaaaggtgaaagactagaggatgcacgaaatatctttaaggatcttttggtcaaaggctataatat |
30126819 |
T |
|
| Q |
106 |
agatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggctgc |
205 |
Q |
| |
|
| |||| | |||||||| | ||||||||| ||||| ||| ||| ||| |||||| | ||||| ||||| ||| ||| ||||| |||||||| | ||| |
|
|
| T |
30126818 |
aactgtcaacacatataccgatatgatccatgggttgtgtaacatgggcttgtttgatgaagcattggctttgttgttagaaatgaaagacaatagttgc |
30126719 |
T |
|
| Q |
206 |
attcca |
211 |
Q |
| |
|
|||||| |
|
|
| T |
30126718 |
attcca |
30126713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 29085153 - 29085359
Alignment:
| Q |
5 |
atgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataatc |
104 |
Q |
| |
|
|||||||||||||||||| |||| | |||||||| || |||||| | | ||||||||||| || ||||||| ||||||| ||| | |||||| || |
|
|
| T |
29085153 |
atgtacacatacactattcttattgatggattgtgtaaaggtggaagactaaaggatgcacggaatatttttgaggatctttaagtcgagggctatgata |
29085252 |
T |
|
| Q |
105 |
tagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggctg |
204 |
Q |
| |
|
|| |||| | ||||||| ||||||||||| ||||||||| | ||||| |||||| | ||||| ||| | ||| |||| |||||| |||||| | | || |
|
|
| T |
29085253 |
taactgtcaacacatataacgttatgatccatgggttttgtaagaagggcttgtttgatgaagcattgtctttgttgtcaaaaatgaaagacagtagttg |
29085352 |
T |
|
| Q |
205 |
cattcca |
211 |
Q |
| |
|
||||||| |
|
|
| T |
29085353 |
cattcca |
29085359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 25451254 - 25451341
Alignment:
| Q |
6 |
tgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaa |
93 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| ||| ||||| | | |||||||| | ||||||||||||||||||||||||| |
|
|
| T |
25451254 |
tgtacacatacactatttttattgacggattgtgtaaaaatggaagactagaggatgcatgggaagtttttgaagatcttttggtcaa |
25451341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 217
Target Start/End: Complemental strand, 15726986 - 15726841
Alignment:
| Q |
72 |
tttttgaagatcttttggtcaaaggctataatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgtt |
171 |
Q |
| |
|
||||| ||||||||||| | |||||||||||| || |||| | ||||||| | |||||||| | || ||||| ||||| || ||| | ||||| |
|
|
| T |
15726986 |
tttttcaagatcttttgattaaaggctataatttaaatgtttgcacatatagtattatgatcaatggtctttgttcaaagggcttatttgatgaagctac |
15726887 |
T |
|
| Q |
172 |
ggccttgctgtccaaaatggaagacaatggctgcattccagatgct |
217 |
Q |
| |
|
| || ||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
15726886 |
gaccctgctgtcaaaaatggaagacaatggttgcattccagatgct |
15726841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 29905772 - 29905901
Alignment:
| Q |
3 |
atatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataa |
102 |
Q |
| |
|
|||||||||||||||| ||| |||| | |||||||| || |||||| | | || ||||||| ||| ||||||| |||||||| ||||| |||||||| |
|
|
| T |
29905772 |
atatgtacacatacaccattcttattgatggattgtgtaaaggtggaagagtaaatgatgcacaaaatatttttgaggatcttttagtcaagggctataa |
29905871 |
T |
|
| Q |
103 |
tctagatgtctatacatatactgttatgat |
132 |
Q |
| |
|
| || |||| | |||||||| |||||||| |
|
|
| T |
29905872 |
tgtaactgtcaacacatataccgttatgat |
29905901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 15714684 - 15714644
Alignment:
| Q |
177 |
tgctgtccaaaatggaagacaatggctgcattccagatgct |
217 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
15714684 |
tgctgtcaaaaatggaagacaatggttgcattccagatgct |
15714644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 22474 - 22690
Alignment:
| Q |
1 |
agatatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctat |
100 |
Q |
| |
|
||||||| |||||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22474 |
agatatgaacacatacaccattcttgtcaagggattgtgccaaagtggaaaattggaggatgcacgaaaagtttttgaagatcttctggtcaaaggctac |
22573 |
T |
|
| Q |
101 |
aatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatg |
200 |
Q |
| |
|
|| || ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
22574 |
aaccttgatgtctatgcatataccgttatgatccaagggttttgtgacaagggcttgtttgacgaagcgttggccttgctgtcaaaaatggaagagaatg |
22673 |
T |
|
| Q |
201 |
gctgcattccagatgct |
217 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
22674 |
gatgcattccagatgct |
22690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 53486 - 53291
Alignment:
| Q |
15 |
acactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataatctagatgtcta |
114 |
Q |
| |
|
|||||||| ||||||||||| |||| |||||||||||| | ||| |||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
53486 |
acactattcttatcaagggactgtgtcaaagtggaaaactagaggctgcacgaaaagtttttgaagatcttttggtcaaa-------atctaaatgtcta |
53394 |
T |
|
| Q |
115 |
tacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggctgcattccagat |
214 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| |||||| | |||| |||||| |||||||| | ||||||| | ||||| ||||||||| || |
|
|
| T |
53393 |
tacataaaccgttatgatccaagggttttgtgacaagaacttgtttgatgaagtgttggcattgctgtcaataatggaaaagaatggatgcattccaaat |
53294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0573 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0573
Description:
Target: scaffold0573; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 4270 - 4478
Alignment:
| Q |
3 |
atatgtacacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataa |
102 |
Q |
| |
|
|||||||||||||||||||| |||| || ||| |||| || |||||| | | ||||||||| ||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
4270 |
atatgtacacatacactattcttattaatggactgtgtaaaggtggaagaccggaggatgcacaaaatatttttgaggatcttttggtcaaaggttataa |
4369 |
T |
|
| Q |
103 |
tctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgttggccttgctgtccaaaatggaagacaatggc |
202 |
Q |
| |
|
| || |||| | |||||||| ||||||||||| | ||||||| |||| || ||||| ||||| ||||| || |||| ||||||||||| ||||| |
|
|
| T |
4370 |
tataaatgtaaacacatataccgttatgatccatgtgttttgtaacaacggcatgtttggtgaagcattggctatgttgtcaaaaatggaagaaaatggt |
4469 |
T |
|
| Q |
203 |
tgcattcca |
211 |
Q |
| |
|
||||||||| |
|
|
| T |
4470 |
tgcattcca |
4478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 15062686 - 15062535
Alignment:
| Q |
59 |
gatgcacgaaaagtttttgaagatcttttggtcaaaggctataatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgt |
158 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||| | || | || |||||||||||||| | ||||| | || |||||| ||||||| || | |
|
|
| T |
15062686 |
gatgcacaaaaggtttttgaagatcttttggtcaaaggctacagtccaaatatctatacatatacttctttgatcaatggattttgtaacaagggcttct |
15062587 |
T |
|
| Q |
159 |
ttaaggaagcgttggccttgctgtccaaaatggaagacaatggctgcattcc |
210 |
Q |
| |
|
|| | |||| |||||| ||||||| |||||| |||||||||| |||||||| |
|
|
| T |
15062586 |
ttgatgaaggattggccatgctgtcaaaaatgaaagacaatggttgcattcc |
15062535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 24219094 - 24218959
Alignment:
| Q |
10 |
cacatacactatttttatcaagggattgtgccaaagtggaaaattgaaggatgcacgaaaagtttttgaagatcttttggtcaaaggctataatctagat |
109 |
Q |
| |
|
|||||||| |||| ||||||| ||||| ||| ||||||||| | | |||||||| | |||||||||||||||| |||||||||| ||||| ||| | ||| |
|
|
| T |
24219094 |
cacatacaatattcttatcaatggattatgcaaaagtggaagactaaaggatgcgcaaaaagtttttgaagatgttttggtcaatggctacaatattgat |
24218995 |
T |
|
| Q |
110 |
gtctatacatatactgttatgatccaagggttttgt |
145 |
Q |
| |
|
|| |||||||||| | ||||||| |||| |||||| |
|
|
| T |
24218994 |
gtgtatacatataatactatgatcaaaggattttgt |
24218959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 217
Target Start/End: Original strand, 10130338 - 10130484
Alignment:
| Q |
71 |
gtttttgaagatcttttggtcaaaggctataatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgt |
170 |
Q |
| |
|
|||||| |||||||| | | |||||||| ||||||||||||||||||||||||| |||||||| ||| || ||| || |||| || ||| | ||||| |
|
|
| T |
10130338 |
gtttttcaagatcttctaataaaaggctacaatctagatgtctatacatatactgctatgatccgaggattctgttacgagggcttatttgatgaagcac |
10130437 |
T |
|
| Q |
171 |
tggccttgctgtccaaaatggaagacaatggctgcattccagatgct |
217 |
Q |
| |
|
|||| |||||||| |||||| |||||||||| ||||| ||| ||||| |
|
|
| T |
10130438 |
tggctttgctgtcaaaaatgaaagacaatgggtgcatgccaaatgct |
10130484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 217
Target Start/End: Original strand, 17251514 - 17251660
Alignment:
| Q |
71 |
gtttttgaagatcttttggtcaaaggctataatctagatgtctatacatatactgttatgatccaagggttttgtgacaagggtttgtttaaggaagcgt |
170 |
Q |
| |
|
|||||| | ||||||||| | |||||| ||||| ||||||| ||||||| | |||||||| | ||| ||||| | || | |||||| | ||||| | |
|
|
| T |
17251514 |
gtttttcaggatcttttgatgaaaggccataatgtagatgttgtaacatatagtattatgatcaatgggctttgtaaagagagcttgtttgatgaagcat |
17251613 |
T |
|
| Q |
171 |
tggccttgctgtccaaaatggaagacaatggctgcattccagatgct |
217 |
Q |
| |
|
|| |||||||||| |||||||||||||| ||||| |||| |||||| |
|
|
| T |
17251614 |
tgaccttgctgtcaaaaatggaagacaaaggctgtgttcctgatgct |
17251660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 19490544 - 19490597
Alignment:
| Q |
164 |
gaagcgttggccttgctgtccaaaatggaagacaatggctgcattccagatgct |
217 |
Q |
| |
|
||||| ||| |||||||||| |||||||||| ||| ||||||||||| |||||| |
|
|
| T |
19490544 |
gaagcattgaccttgctgtcaaaaatggaagccaaaggctgcattcctgatgct |
19490597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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