View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20409_low_3 (Length: 694)
Name: NF20409_low_3
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 20 - 632
Target Start/End: Original strand, 2389129 - 2389741
Alignment:
| Q |
20 |
ggattaaaatcatcaactgcctcacctcagattcaaatgttaaagcatctccttgttcggtgaagcgttccttctggtgtaggttatccagatagtcaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2389129 |
ggattaaaatcatcaactgcctcacctcagattcaaatgttaaagcatctccttgttcagtgaagcgttccttctggtgtaggttatccagatagtcaag |
2389228 |
T |
|
| Q |
120 |
agtttccaacccttctaccctcacttcgctgtcaataatcggaaaaatttaaggttaagttaaaaacttatatgcgaattcaaagttttgcaactttata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2389229 |
agtttccaacccttctaccctcacttcgctgtcaataatcggaaaaatttaaggttaagttaaaaacttatatgcgaattcaaagttttgcaactttata |
2389328 |
T |
|
| Q |
220 |
aaatttaaaaataaacaaaaggacttgtgaaaagaaattaatatttcagaacagattgattccttgataaaataatcgatcttgatcttatcttgaaagt |
319 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2389329 |
aaatttaaaaataaacaaaaggactcgtgaaaagaaattaatatttcagaacagattgattccttgataaaataattgatcttgatcttatcttgaaagt |
2389428 |
T |
|
| Q |
320 |
gttggaatagcatacagacctgatatcagatatggagaaatatgtatgaaatgcaaaggagaaactgaaaggcttgccattgacattccggatgcgagat |
419 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2389429 |
gttggaatagcatacagacctgatatcggatatcgagaaatatgtatgaaatgcaaaggagaaactgaaaggcttgccattgacattccggatgcgagat |
2389528 |
T |
|
| Q |
420 |
atcatattcagacggccatctgctgccaaacagacccttaggcgaaactcgaagctgaataaaataatttagtacataaaacattgttatccaacaatct |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2389529 |
atcatattcagacggccatctgctgccaaacagacccttaggcgaaactcgaagctgaataaaataatttagtacataaaacattgtcatccaacaatct |
2389628 |
T |
|
| Q |
520 |
caattctcaagatacatgaaatatacatgttactgtataggaactggggtatctagctacatgcttctgcaatttctactctcttggatgcgattcatca |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2389629 |
caattctcaagatacatgaaatatacatgttactgtataggaactggggtatctagctacatgcttctggaatttctactctcttggatgcgattcatca |
2389728 |
T |
|
| Q |
620 |
attgtcctttaat |
632 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2389729 |
attgtcctttaat |
2389741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University