View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_low_31 (Length: 217)
Name: NF20409_low_31
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_low_31 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 35639596 - 35639812
Alignment:
| Q |
1 |
ataacttttttccaaccgatctcttctaccctcgtccacaacctgaacaatccacaacttctcccaccgtgcttcctctcaaaactccaaacagtgaaga |
100 |
Q |
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| T |
35639596 |
ataacttttttccaaccgatctcttctaccctcgtccacagcctgaacaatccacaacttctcccaccgtgcttcctctcaaaactccaaacggtgaaga |
35639695 |
T |
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| Q |
101 |
tcttcctcagactcaacaaaaacaaccagctaggagcatgatcaaagtaaacccttctacttcttctttggtttatactcacaaaacacaatcttttggt |
200 |
Q |
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| T |
35639696 |
tcttcctcagactcaacaaaaacaaccagctaggagcatgatcaaagtaaacccttctacttcttctttggtttatactcacaaaacacaatcttttggt |
35639795 |
T |
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| Q |
201 |
gtcgttgacaataacat |
217 |
Q |
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| T |
35639796 |
gtcgttgacaataacat |
35639812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 35642326 - 35642540
Alignment:
| Q |
3 |
aacttttttccaaccgatctcttctaccctcgtccacaacctgaacaatccacaacttctcccaccgtgcttcctctcaaaactccaaacagtgaagatc |
102 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||| || ||||||| | |||||||||||||||||||||||| |||||||||| |
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| T |
35642326 |
aacttttttccaactgatctcttctaccctcgtccacaacctcaacaatctactgcttctcctaacgtgcttcctctcaaaactccaaatagtgaagatc |
35642425 |
T |
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| Q |
103 |
ttcctcagactcaacaaaaacaaccagctaggagcatgatcaaagtaaacccttctacttcttctttggtttatactcacaaaacacaatcttttggtgt |
202 |
Q |
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|||| || ||||||||| ||||||||||||| ||||||||||||| | |||||||||||| |||||||||||||||||||| ||||||||||||| ||| |
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| T |
35642426 |
ttccacaaactcaacaacaacaaccagctagtagcatgatcaaagccaccccttctacttcatctttggtttatactcacaacacacaatcttttgctgt |
35642525 |
T |
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| Q |
203 |
cgttgacaataacat |
217 |
Q |
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| T |
35642526 |
tgttgacaataacat |
35642540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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