View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_low_5 (Length: 586)
Name: NF20409_low_5
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 497; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Complemental strand, 42802555 - 42802001
Alignment:
| Q |
18 |
tttcatactagtactgatttggcgaaagtgtctgaatcaaaccaactgatcgaagtacattgaaagacacaaactggtagagaaaaaaccaagttttctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42802555 |
tttcatactagtactgatttggcgaaagtgtctgaatcaaaccaactgatcgaagtacattgaaagacacaaactggtagagaaaaaaccaagttttctt |
42802456 |
T |
|
| Q |
118 |
agtcaacgtcagcatata--ttacagtagaaaaggaagaagnnnnnnnnnctcgccagttatacttataacacatgttcagaactctacaaacaagacca |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42802455 |
agtcaacgtcagcatatacattacagtagaaaaggaagaagaaaaaaaaactcgccagttatacttataacacatgttcagaactctacaaacaagacca |
42802356 |
T |
|
| Q |
216 |
tacttgctcatattggtcaactgaaaaattaagcagcgagtgctgcaactttagcatacattggttatcaacaaaatataaaaacttgcaatggagaaag |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42802355 |
tacttgctcatattggtcaactgaaaaattaagcagcgagtgctgcaactttagcttacattggttatcaacaaaatataaaaacttgaaatggagaaag |
42802256 |
T |
|
| Q |
316 |
gcttcttttggtttctcctagcaaggggtatttgattggcaaacaaggcagtgttaaaagattttattattttatcaccttctagacttccttattaaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42802255 |
acttcttttggtttctcctagcaaggggtatttgattggcaaacaaggcagtgttaaaagattttattattttatcaccttttagacttccttattaaat |
42802156 |
T |
|
| Q |
416 |
tatgagcctcacccctggcttcccctaaccttgatttttgaccatttccctgcattgtagcatgtctctcttggaagctatttgttggatctcgtgacgg |
515 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42802155 |
tatgagcctcacccctggcttccccaaaccttgatttttgaccatttccctgcattgtagcatgtctctcttggaagctatttgttggatctcgtgacgg |
42802056 |
T |
|
| Q |
516 |
ccaaggttgtgagagtgaaaatgtaagacaatttgtaagcatcttacgagctttg |
570 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42802055 |
ccaaggttgtgagagtgaaaatgtaagacaatttgtaagcatcttacgagctttg |
42802001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 227 - 527
Target Start/End: Complemental strand, 42758550 - 42758257
Alignment:
| Q |
227 |
attggtcaactgaaaaattaagcagcgagtgctgcaactttagcat-acattggttatcaacaaaatataaaaacttgcaatggagaaaggcttcttttg |
325 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||| |||||||||| |||| |||| |
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| T |
42758550 |
attggtcaactgaaaaattaagcagcgagtgctgcaactttaccattacat-ggttatcaacaaaatataaaaacttgaaatggagaaaagcttattttt |
42758452 |
T |
|
| Q |
326 |
gtttctcctagcaaggggtatttgattggcaaacaaggcagtgttaaaagattttattattttatcaccttctagacttccttattaaattatgagcctc |
425 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42758451 |
gtttctcctagcaaggggtatttgcttggctaacaaggcagtg-------attttatcattttatcaccttttagacttccttattaaattatgagcctc |
42758359 |
T |
|
| Q |
426 |
acccctggcttcccctaaccttgatttttgaccatttccctgcattgtagcatgtctctcttggaagctatttgttggatctcgtgacggccaaggttgt |
525 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
42758358 |
gcccctggcttcccctaaccttgatttttgaccatttccctgcattgtagcatgtctctcttggaagctatttatgggatctcgtgacggccaaggttgt |
42758259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 42758711 - 42758580
Alignment:
| Q |
18 |
tttcatactagtactgatttggcgaaagtgtctgaatcaaaccaactgatcgaagtacattgaaagacacaaactggtagagaaaaaaccaagttttctt |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |||||||| ||||||| |||||||||||| |
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| T |
42758711 |
tttcatactagtacttatttggcgaaagtgtctgaatcaaaccatctgattgaagtacattgcaagacaccaactggtaaagaaaaagccaagttttctt |
42758612 |
T |
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| Q |
118 |
agtcaacgtcagcatatattacagtagaaaag |
149 |
Q |
| |
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||||||||||||||| |||||||| ||||||| |
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| T |
42758611 |
agtcaacgtcagcatctattacaggagaaaag |
42758580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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