View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20409_low_6 (Length: 499)
Name: NF20409_low_6
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Original strand, 13765748 - 13766211
Alignment:
| Q |
18 |
ggctaagggaagggatcttgttgtggtggaggtagctaataagaaccagtgtttggcgtatttgtggactattttgaagatctaagactcgtagatgttc |
117 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||| ||||||||||||||||||| ||||||| ||| |||||| |||| |||||||| |||||||| |
|
|
| T |
13765748 |
ggctaaggggagggatcttgtttttgtggaggtagctgataagaaccagtgtttggcctatttgtaaactgttttgacgatccaagactcgcagatgttc |
13765847 |
T |
|
| Q |
118 |
caatggtcaagagcaaaatggttgagagagagaaggacataatacaacttatttccacgcctgtgtgaagaatagaggtatgaggaattccatctcggca |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13765848 |
caatggtcaagagcaaagtggttgagagagagaaggacataatacaacttatttcctcgcctgtgtgaagaatagaggtatgaggaattccatctcggct |
13765947 |
T |
|
| Q |
218 |
cctagggtggaaaggtggatggaggatgttgcaaagatcaaacaagcgattgtgaatttctttacgcatcatttctcagacccatagacctatagaccga |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13765948 |
cctagggtggaaaggtggatggatgatgttgcaaagaacaaacaagcgattgtgaatttctttacgcatcatttctcagacccatagacctatagaccga |
13766047 |
T |
|
| Q |
318 |
ccatggtcgatattgatttcattcatatttctaatttggataatgtcctgttgttagctctagtcttggtttcaaaaatggaattggtggtttctagtgt |
417 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13766048 |
ccatgggcgatattgatttctttcatatttctaatttggataatgttctgttgtcagctcaattcttggtttcaaaaatggaattggtggtttctagtct |
13766147 |
T |
|
| Q |
418 |
ggatggtaacgagatccctataccggacggatttaatctcaacttctttacacggttgcgaaat |
481 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13766148 |
ggatggtaacgagagccctaggccggacggatttaatctcaacttctttatacggttgcgaaat |
13766211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University