View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_low_7 (Length: 459)
Name: NF20409_low_7
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 2 - 448
Target Start/End: Complemental strand, 46640495 - 46640049
Alignment:
| Q |
2 |
aatgttcctgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagttta |
101 |
Q |
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| T |
46640495 |
aatgttcctgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagttta |
46640396 |
T |
|
| Q |
102 |
tgtggaaaagagctaagtctattaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgta |
201 |
Q |
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| T |
46640395 |
tgtggaaaagagctatgtctgttaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgta |
46640296 |
T |
|
| Q |
202 |
aggatcatctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtt |
301 |
Q |
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| T |
46640295 |
aggatcatctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtt |
46640196 |
T |
|
| Q |
302 |
tgtttccatgcttggagtgctatgtaggctttggtgagtcttgggtttagtggtggtagagattggtgtgatgaggggttgatggatatgagaatgacaa |
401 |
Q |
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| T |
46640195 |
tgtttccatgcttggagtgctatgtaggctttggtgagtcttgggtttagtggtggtagagattggtgtgatgaggggttgatggatatgagaatgacaa |
46640096 |
T |
|
| Q |
402 |
tgaaggtaattaagaattgtagactataagaggattccattactgat |
448 |
Q |
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| T |
46640095 |
tgaaggtaattaagaattgtagactataagaggattccattactgat |
46640049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 2 - 444
Target Start/End: Complemental strand, 46642787 - 46642345
Alignment:
| Q |
2 |
aatgttcctgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagttta |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642787 |
aatgttcctgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagttta |
46642688 |
T |
|
| Q |
102 |
tgtggaaaagagctaagtctattaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgta |
201 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642687 |
tgtggaaaagagctatgtctgttaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgta |
46642588 |
T |
|
| Q |
202 |
aggatcatctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtt |
301 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46642587 |
aggatcatctagtgacggtgcacaaatgatacctgtgtagttgcatacatttgggccataccagtttaaagtggtgttttttgggtctgaggtgaatgtt |
46642488 |
T |
|
| Q |
302 |
tgtttccatgcttggagtgctatgtaggctttggtgagtcttgggtttagtggtggtagagattggtgtgatgaggggttgatggatatgagaatgacaa |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642487 |
tgtttccatgcttggagtgctatgtaggctttggtgagtcttggatttagtggtggtagagattggtgtgatgaggggttgatggatatgagaatgacaa |
46642388 |
T |
|
| Q |
402 |
tgaaggtaattaagaattgtagactataagaggattccattac |
444 |
Q |
| |
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|||||| |||||||| || | |||||||||||||||||||||| |
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| T |
46642387 |
tgaaggaaattaagagttttggactataagaggattccattac |
46642345 |
T |
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