View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_low_9 (Length: 428)
Name: NF20409_low_9
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 38356456 - 38356857
Alignment:
| Q |
17 |
agaatctaacccatttgtggattttagaggagtgccaagtgtaacatcaaaatcctcaacttccaatgagattgtagctttggataacacaagataagag |
116 |
Q |
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| T |
38356456 |
agaatctaacccatttgtggattttagaggagtgccaagtgtaacatcaaaatcctcaacttccaatgagattgtagctttggataacacaagataagag |
38356555 |
T |
|
| Q |
117 |
aacaacaacttcataactaatataaatacacacccatattcaccttaccaaatcaccattcatacgagtacatttatcaaaagcacaacaagcattttaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38356556 |
aacaacaacttcataactaatataaatacacacccatattcaccttaccaaatcaccattcatacgagtacatttatcaaaagcacaacaagcattttaa |
38356655 |
T |
|
| Q |
217 |
tttcattgcaaaatggccgcatcatccatggctctctcttcaccaaccttggctggcaagccagtcaagctaaccccttcaagccaagaattgggagctg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38356656 |
tttcattgcaaaatggccgcatcatccatggctctctcttcaccaaccttggctggcaagccagtcaagctaaccccttcaagccaagaattgggagctg |
38356755 |
T |
|
| Q |
317 |
caaggttcaccatgaggaaggctgctaccaccaagaaagtagcctcctcaggaagcccatggtacggcccagaccgtgttaagtacttaggcccattctc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38356756 |
caaggttcaccatgaggaaggctgctaccaccaagaaagtagcctcctcaggaagcccatggtacggcccagaccgtgttaagtacttaggcccattctc |
38356855 |
T |
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| Q |
417 |
tg |
418 |
Q |
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|| |
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| T |
38356856 |
tg |
38356857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 3569439 - 3569488
Alignment:
| Q |
367 |
ggaagcccatggtacggcccagaccgtgttaagtacttaggcccattctc |
416 |
Q |
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| T |
3569439 |
ggaagcccatggtacggtccagaccgtgtgaagtacttgggcccattctc |
3569488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 3572486 - 3572537
Alignment:
| Q |
367 |
ggaagcccatggtacggcccagaccgtgttaagtacttaggcccattctctg |
418 |
Q |
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||||||||||||||||| ||||||||||| |||||||| || |||||||||| |
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| T |
3572486 |
ggaagcccatggtacggtccagaccgtgtcaagtacttgggtccattctctg |
3572537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 3563791 - 3563840
Alignment:
| Q |
367 |
ggaagcccatggtacggcccagaccgtgttaagtacttaggcccattctc |
416 |
Q |
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||||| || |||||||| ||||||||||| |||||||| ||||||||||| |
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| T |
3563791 |
ggaagtccttggtacggtccagaccgtgtcaagtacttgggcccattctc |
3563840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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