View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2040_high_1 (Length: 602)

Name: NF2040_high_1
Description: NF2040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2040_high_1
NF2040_high_1
[»] chr5 (3 HSPs)
chr5 (197-585)||(7926913-7927301)
chr5 (77-193)||(30964673-30964797)
chr5 (82-128)||(35836303-35836349)
[»] chr4 (1 HSPs)
chr4 (77-191)||(26144947-26145069)
[»] chr1 (2 HSPs)
chr1 (82-139)||(29633680-29633737)
chr1 (78-184)||(51946197-51946312)
[»] chr8 (2 HSPs)
chr8 (84-191)||(41076478-41076595)
chr8 (84-191)||(42009169-42009285)
[»] chr3 (2 HSPs)
chr3 (78-129)||(6102022-6102073)
chr3 (142-191)||(6100982-6101031)
[»] chr6 (1 HSPs)
chr6 (78-119)||(31047199-31047240)


Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 197 - 585
Target Start/End: Complemental strand, 7927301 - 7926913
Alignment:
Q  197 ttatttactagggtggttgggtaataacagcccaggaaggtgggaaaattatcccgctcattggcgtagaaatcaaagtctcactaatttgatttcactt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7927301 ttatttactagggtggttgggtaataacagcccaggaaggtgggaaaattatcccgctcattggcgtagaaatcaaagtctcactaatttgatttcactt 7927202  T
Q  297 tgtgatgaatctcaaactcacactctccttcttcccatcaccatcttccaccatggaagctcgtctcaaaatcttcaacccttcccttctgggtcaccgc 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7927201 tgtgatgaatctcaaactcacactctccttcttcccatcaccatcttccaccatggaagctcgtctcaaaatcttcaacccttcccttctgggtcaccgc 7927102  T
Q  397 ttagcctcaaaaaccaaaacctccacacccattttcccttctcaccattaccactacaaccctcttcaaaaaccactcaaaatctcatcaactctcactc 496  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7927101 ttagcctcaaaaaccaaaacctccacacccattttcccttcacaccattaccactacaaccctcttcaaaaaccactcaaaatctcatcaactctcactc 7927002  T
Q  497 gtttttctcactcacccattcctccaaattctaatcctcattgtcatagattcttctcttcactcacatcttctaaaaatctcaacttt 585  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7927001 gtttttctcactcacccattcctccaaattcgaatcctcatagtcatagattcttctcttcactcacatcttctaaaaatctcaacttt 7926913  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 30964673 - 30964797
Alignment:
Q  77 tcaaggtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaacta----ccat----gggtgtatcagagtgtgttgccagcta 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    ||||     ||||||  ||||||||||||||||||    
T  30964673 tcaaggtttatatgagttttgactaaactacccttcattaaaagatgaaataccaaaactatcctccatatggaggtgtacaagagtgtgttgccagcta 30964772  T
Q  169 agtgtgttcacctatcaggactcat 193  Q
    |||||||||||||||||||||||||    
T  30964773 agtgtgttcacctatcaggactcat 30964797  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 35836303 - 35836349
Alignment:
Q  82 gtttatatgagttttgactaaactacccttcattaaaagataaaata 128  Q
    |||||||||| || |||| |||||||||||||||||||||| |||||    
T  35836303 gtttatatgaattatgacaaaactacccttcattaaaagatgaaata 35836349  T

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Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 26145069 - 26144947
Alignment:
Q  77 tcaaggtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaacta----ccat----gggtgtatcagagtgtgttgccagcta 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    ||||     ||||||  ||||||||||||||||||    
T  26145069 tcaaggtttatatgagttttgactaaactacccttcattaaaagatgaaataccaaaactatcctccatatggaggtgtacaagagtgtgttgccagcta 26144970  T
Q  169 agtgtgttcacctatcaggactc 191  Q
    |||||||||||| ||||||||||    
T  26144969 agtgtgttcacccatcaggactc 26144947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 29633680 - 29633737
Alignment:
Q  82 gtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactacc 139  Q
    ||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||    
T  29633680 gtttatatgggttttgacaaaactacccttcattaaaagatgaaataccaaaactacc 29633737  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 51946197 - 51946312
Alignment:
Q  78 caaggtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactaccat---------gggtgtatcagagtgtgttgccagcta 168  Q
    ||||||||||||| |||||||| |||||||||||||||||||||  |||||| ||||||| |||         |||||||| || |||||||||  ||||    
T  51946197 caaggtttatatgggttttgacaaaactacccttcattaaaagaagaaatactaaaactatcatgccacatgggggtgtataagggtgtgttgcatgcta 51946296  T
Q  169 agtgtgttcacctatc 184  Q
    ||||||||||||||||    
T  51946297 agtgtgttcacctatc 51946312  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 84 - 191
Target Start/End: Original strand, 41076478 - 41076595
Alignment:
Q  84 ttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactaccat----------gggtgtatcagagtgtgttgccagctaagtgt 173  Q
    ||||||| |||||||| |||||||||||||||||||| | |||||||||||||||| |          |||||||  |||||||||||||| |||||  |    
T  41076478 ttatatgggttttgacaaaactacccttcattaaaaggtgaaataccaaaactaccctgccacatggggggtgtacaagagtgtgttgccacctaagcat 41076577  T
Q  174 gttcacctatcaggactc 191  Q
    ||||||||||||||||||    
T  41076578 gttcacctatcaggactc 41076595  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 191
Target Start/End: Original strand, 42009169 - 42009285
Alignment:
Q  84 ttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactac-------catggg--tgtatcagagtgtgttgccagctaagtgtg 174  Q
    ||||||| |||||||| |||||||||||||||||||| | ||||||| |||||||       ||||||  ||||  |||||||||||||| |||||  ||    
T  42009169 ttatatgggttttgacaaaactacccttcattaaaaggtgaaataccgaaactaccctgccacatggggatgtacaagagtgtgttgccacctaagcatg 42009268  T
Q  175 ttcacctatcaggactc 191  Q
    |||||||||||||||||    
T  42009269 ttcacctatcaggactc 42009285  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 6102073 - 6102022
Alignment:
Q  78 caaggtttatatgagttttgactaaactacccttcattaaaagataaaatac 129  Q
    ||||||||||||| |||||||| ||||||| |||||||||||||| ||||||    
T  6102073 caaggtttatatgggttttgacaaaactactcttcattaaaagatgaaatac 6102022  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 6101031 - 6100982
Alignment:
Q  142 gggtgtatcagagtgtgttgccagctaagtgtgttcacctatcaggactc 191  Q
    |||||||| || | |||||||||||||| |||||||||||||||| ||||    
T  6101031 gggtgtataagggggtgttgccagctaaatgtgttcacctatcagcactc 6100982  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 31047199 - 31047240
Alignment:
Q  78 caaggtttatatgagttttgactaaactacccttcattaaaa 119  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  31047199 caaggtttatatgggttttgacaaaactacccttcattaaaa 31047240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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