View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2040_high_11 (Length: 266)

Name: NF2040_high_11
Description: NF2040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2040_high_11
NF2040_high_11
[»] scaffold0007 (2 HSPs)
scaffold0007 (18-233)||(233586-233800)
scaffold0007 (18-66)||(232986-233034)
[»] chr4 (5 HSPs)
chr4 (87-233)||(43014445-43014591)
chr4 (18-143)||(41234828-41234953)
chr4 (24-87)||(43019189-43019252)
chr4 (18-121)||(13463910-13464013)
chr4 (18-121)||(38062791-38062894)
[»] chr3 (4 HSPs)
chr3 (24-215)||(38627999-38628190)
chr3 (18-130)||(36740867-36740979)
chr3 (46-121)||(54174631-54174706)
chr3 (46-87)||(9464747-9464788)
[»] chr7 (3 HSPs)
chr7 (18-225)||(8951504-8951710)
chr7 (18-121)||(4305082-4305185)
chr7 (18-118)||(6733395-6733495)
[»] chr5 (2 HSPs)
chr5 (18-143)||(41962068-41962193)
chr5 (18-167)||(9268315-9268464)
[»] chr1 (2 HSPs)
chr1 (19-121)||(17644251-17644353)
chr1 (26-143)||(7549504-7549621)
[»] chr8 (1 HSPs)
chr8 (90-164)||(10292659-10292733)


Alignment Details
Target: scaffold0007 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 233800 - 233586
Alignment:
Q  18 ggtggtatttagcatacacaagtccaagtttttgggtaccatacaaaagtgagtttttcaccattgatatgttattaaaaaattcaatggcttatattga 117  Q
    ||||| |||||||||| | |||||||||||||| |||||||| ||||||||||||||| |||||| |||| |||||||||||||| |||||||| | |||    
T  233800 ggtggcatttagcatata-aagtccaagtttttaggtaccattcaaaagtgagttttttaccattaatatattattaaaaaattcgatggcttagactga 233702  T
Q  118 agaaggactacttatatagtgggtttcttgttatatttttggtatttgcacaaggagagtcctacaataatgtaattccatttatgcaattaggataaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  233701 agaaggactacttatatagtgggtttcttgttatatttttggtatttgcacaaggagtgtcctacaatcatgtaattccatttatgcaattaggataaaa 233602  T
Q  218 caatcattatgcatat 233  Q
    ||||||||||| ||||    
T  233601 caatcattatgtatat 233586  T

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Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 232986 - 233034
Alignment:
Q  18 ggtggtatttagcatacacaagtccaagtttttgggtaccatacaaaag 66  Q
    ||||| |||||| ||||||||||||| ||||||| ||| ||||||||||    
T  232986 ggtggcatttagtatacacaagtccatgtttttgtgtatcatacaaaag 233034  T

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Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 43014591 - 43014445
Alignment:
Q  87 tgttattaaaaaattcaatggcttatattgaagaaggactacttatatagtgggtttcttgttatatttttggtatttgcacaaggagagtcctacaata 186  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43014591 tgttattaaaaaattcaatggcttagattgaagaaggactacttatatagtgggtttcttgttatatttttggtatttgcacaaggagagtcctacaata 43014492  T
Q  187 atgtaattccatttatgcaattaggataaaacaatcattatgcatat 233  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  43014491 atgtaattccatttatgcaattaggataaaacaatcattatgtatat 43014445  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 41234953 - 41234828
Alignment:
Q  18 ggtggtatttagcatacacaagtccaagtttttgggtaccatacaaaagtgagtttttcaccattgatatgttattaaaaaattcaatggcttatattga 117  Q
    ||||| |||||| |||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||| |    
T  41234953 ggtggcatttagtatacacaagttcatgtttttgggtatcatacaaaagtgagtttttcaccattgatatattattaaaaaattcaatggctaagattaa 41234854  T
Q  118 agaaggactacttatatagtgggttt 143  Q
    |||| || ||||| | |||| |||||    
T  41234853 agaatgagtacttgtttagtaggttt 41234828  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 43019252 - 43019189
Alignment:
Q  24 atttagcatacacaagtccaagtttttgggtaccatacaaaagtgagtttttcaccattgatat 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43019252 atttagcatacacaagtccaagtttttgggtaccatacaaaagtgagtttttcaccattgatat 43019189  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 13464013 - 13463910
Alignment:
Q  18 ggtggtatttagcatacacaagtccaagtttttgggtaccatacaaaagtgagtttttcaccattgatatgttattaaaaaattcaatggcttatattga 117  Q
    ||||| |||||  ||||||||||  || |||||| ||| ||||||||| || ||||||||||||||||||  ||||||| |||||||||||  | |||||    
T  13464013 ggtggcatttataatacacaagtgaaactttttgtgtatcatacaaaaatgtgtttttcaccattgatataatattaaacaattcaatggccaagattga 13463914  T
Q  118 agaa 121  Q
    ||||    
T  13463913 agaa 13463910  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 38062791 - 38062894
Alignment:
Q  18 ggtggtatttagcatacacaagtccaagtttttgggtaccatacaaaagtgagtttttcaccattgatatgttattaaaaaattcaatggcttatattga 117  Q
    ||||| |||||| || |||||||  || |||||| ||| |||||| || |||||||||||||||| |||| |||||||| |||| ||||||  | |||||    
T  38062791 ggtggcatttagaatgcacaagtgaaactttttgtgtatcatacacaaatgagtttttcaccattaatatattattaaataattgaatggccaagattga 38062890  T
Q  118 agaa 121  Q
    ||||    
T  38062891 agaa 38062894  T

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Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 38628190 - 38627999
Alignment:
Q  24 atttagcatacacaagtccaagtttttgggtaccatacaaaagtgagtttttcaccattgatatgttattaaaaaattcaatggcttatattgaagaagg 123  Q
    |||||| |||||||||||||  |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||  | |||  ||||||    
T  38628190 atttagtatacacaagtccatatttttgggtaccatacaaaagtgagtttttcacctttgatatattatttaaaaattcaatggccaagattagagaagg 38628091  T
Q  124 actacttatatagtgggtttcttgttatatttttggtatttgcacaaggagagtcctacaataatgtaattccatttatgcaattaggataa 215  Q
    | |||||| ||||| |||||  |||||||||||||||||||||| || | | |||||||||||||| ||||| |||||||||||||||||||    
T  38628090 attacttaaatagtaggtttagtgttatatttttggtatttgcaaaaagggtgtcctacaataatggaattctatttatgcaattaggataa 38627999  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 36740979 - 36740867
Alignment:
Q  18 ggtggtatttagcatacacaagtccaagtttttgggtaccatacaaaagtgagtttttcaccattgatatgttattaaaaaattcaatggcttatattga 117  Q
    ||||| |||||| || |||||||  || |||||| ||| |||||| || | ||||||||||||||||||| |||||||| |||| ||||||  | |||||    
T  36740979 ggtggcatttagaatgcacaagtgaaactttttgtgtatcatacacaaataagtttttcaccattgatatattattaaataattgaatggccaaaattga 36740880  T
Q  118 agaaggactactt 130  Q
    |||| || |||||    
T  36740879 agaatgattactt 36740867  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 54174706 - 54174631
Alignment:
Q  46 tttttgggtaccatacaaaagtgagtttttcaccattgatatgttattaaaaaattcaatggcttatattgaagaa 121  Q
    |||||| |||||||||||||  | |||||| | ||||||||| |||||||| |||||||||||| | |||||||||    
T  54174706 tttttgtgtaccatacaaaaaggtgttttttatcattgatatattattaaataattcaatggctaagattgaagaa 54174631  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 9464747 - 9464788
Alignment:
Q  46 tttttgggtaccatacaaaagtgagtttttcaccattgatat 87  Q
    |||||| ||| ||||||||| |||||||||||||||||||||    
T  9464747 tttttgtgtatcatacaaaaatgagtttttcaccattgatat 9464788  T

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Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 8951710 - 8951504
Alignment:
Q  18 ggtggtatttagcatacacaagtccaagtttttgggtaccatacaaaagtgagtttttcaccattgatatgttattaaaaaattcaatggcttatattga 117  Q
    ||||| ||||| |||||||||||| | ||||||||||| |||| ||||||||||||||||||||||||||  | | |||||||||||||||  | ||| |    
T  8951710 ggtggcatttaacatacacaagtctatgtttttgggtatcatataaaagtgagtttttcaccattgatataat-taaaaaaattcaatggccaagattaa 8951612  T
Q  118 agaaggactacttatatagtgggtttcttgttatatttttggtatttgc-acaaggagagtcctacaataatgtaattccatttatgcaattaggataaa 216  Q
    |||| |  ||||| ||||||||||||  ||||||||||||||||||||| | |||||  |||||||||||||| ||||||||| |||||||||| |||||    
T  8951611 agaatggttacttgtatagtgggtttggtgttatatttttggtatttgcaagaagga-tgtcctacaataatggaattccattcatgcaattagtataaa 8951513  T
Q  217 acaatcatt 225  Q
    | |||||||    
T  8951512 aaaatcatt 8951504  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 4305185 - 4305082
Alignment:
Q  18 ggtggtatttagcatacacaagtccaagtttttgggtaccatacaaaagtgagtttttcaccattgatatgttattaaaaaattcaatggcttatattga 117  Q
    ||||| |||||| || |||||||  || |||||| ||| |||||| || |||||||||||||||| |||| |||||||| |||| ||||||  | |||||    
T  4305185 ggtggcatttagaatgcacaagtgaaactttttgtgtatcatacacaaatgagtttttcaccattaatatattattaaataattgaatggccaagattga 4305086  T
Q  118 agaa 121  Q
    ||||    
T  4305085 agaa 4305082  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 6733495 - 6733395
Alignment:
Q  18 ggtggtatttagcatacacaagtccaagtttttgggtaccatacaaaagtgagtttttcaccattgatatgttattaaaaaattcaatggcttatattga 117  Q
    ||||| |||||| ||||||| ||  || |||||| ||| ||||||||| || |||||||| |||||||||  ||| ||| |||||||||||| | |||||    
T  6733495 ggtggcatttagaatacacaggtgaaactttttgtgtatcatacaaaaatgtgtttttcatcattgatataatatgaaataattcaatggctaagattga 6733396  T
Q  118 a 118  Q
    |    
T  6733395 a 6733395  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 41962193 - 41962068
Alignment:
Q  18 ggtggtatttagcatacacaagtccaagtttttgggtaccatacaaaagtgagtttttcaccattgatatgttattaaaaaattcaatggcttatattga 117  Q
    ||||| |||||| |||||||||| || |||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||| |    
T  41962193 ggtggcatttagtatacacaagttcatgtttttgggtattatacaaaagtgagtttttcaccattgatatattattaaaaaattcaatggctaagattaa 41962094  T
Q  118 agaaggactacttatatagtgggttt 143  Q
    |||| || ||||| | |||| |||||    
T  41962093 agaatgagtacttgtttagtaggttt 41962068  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 9268315 - 9268464
Alignment:
Q  18 ggtggtatttagcatacacaagtccaagtttttgggtaccatacaaaagtgagtttttcaccattgatatgttattaaaaaattcaatggcttatattga 117  Q
    ||||| |||||| ||||||||||  || |||||| ||| |||||  || |  | ||||||||||||||||  ||||||| |||||||||||  | |||||    
T  9268315 ggtggcatttagaatacacaagtgaaattttttgtgtatcatacccaaatttgcttttcaccattgatataatattaaacaattcaatggccaagattga 9268414  T
Q  118 agaaggactacttatatagtgggtttcttgttatatttttggtatttgca 167  Q
    |||| || ||||| | |||||||||| |||||  ||| ||||||||||||    
T  9268415 agaatgagtacttgtttagtgggtttgttgttcaattgttggtatttgca 9268464  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 17644353 - 17644251
Alignment:
Q  19 gtggtatttagcatacacaagtccaagtttttgggtaccatacaaaagtgagtttttcaccattgatatgttattaaaaaattcaatggcttatattgaa 118  Q
    |||| |||||| ||||||||||| || |||||| ||| ||||||||| || | |||||| |||||||||  ||||||| |||||||||||  | ||||||    
T  17644353 gtggcatttagaatacacaagtcaaactttttgtgtatcatacaaaaatgtgcttttcatcattgatataatattaaacaattcaatggccaagattgaa 17644254  T
Q  119 gaa 121  Q
    |||    
T  17644253 gaa 17644251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 7549621 - 7549504
Alignment:
Q  26 ttagcatacacaagtccaagtttttgggtaccatacaaaagtgagtttttcaccattgatatgttattaaaaaattcaatggcttatattgaagaaggac 125  Q
    |||||||||||||||| |  |||||| ||| |||||| || ||  ||||| ||||||||||| |||||||| |||||||||||  | ||| ||||| |      
T  7549621 ttagcatacacaagtcaatctttttgtgtatcatacacaaatgtattttttaccattgatatattattaaacaattcaatggccaagattaaagaatggt 7549522  T
Q  126 tacttatatagtgggttt 143  Q
    ||||| ||||||||||||    
T  7549521 tacttgtatagtgggttt 7549504  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 10292733 - 10292659
Alignment:
Q  90 tattaaaaaattcaatggcttatattgaagaaggactacttatatagtgggtttcttgttatatttttggtattt 164  Q
    |||||||||||||||||    | ||||||||||| | ||||||||||| ||||||||  |||| |||||||||||    
T  10292733 tattaaaaaattcaatgatcaagattgaagaagggccacttatatagtcggtttcttaatatagttttggtattt 10292659  T

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