View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2040_high_12 (Length: 247)
Name: NF2040_high_12
Description: NF2040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2040_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 44566593 - 44566384
Alignment:
| Q |
20 |
tatcactagttgttgaaacatgtgattagcttgttttcttccgtctactttcaatcattataacttaattatttttgaaagacacgtatcattgtttaga |
119 |
Q |
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| T |
44566593 |
tatcactagttgttgaaacatgtgattagcttgttttcttccgtctactttcaatcattataacttaattatttttgaaagacacgtatcattgtttaga |
44566494 |
T |
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| Q |
120 |
cttatataccactagcctctgcatcggctatatttagatatattgtggcnnnnnnnatgagtgcttatgcaagaaaacttttccattgattgaatgttgt |
219 |
Q |
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| T |
44566493 |
cttatataccactagcctctgcattggctatatttagatatattgtggctttttttatgagtgcttatgcaagaaaacttttccattgattgaatgttgt |
44566394 |
T |
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| Q |
220 |
tagttcgttc |
229 |
Q |
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|||||||||| |
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| T |
44566393 |
tagttcgttc |
44566384 |
T |
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