View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2040_high_4 (Length: 443)

Name: NF2040_high_4
Description: NF2040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2040_high_4
NF2040_high_4
[»] chr4 (7 HSPs)
chr4 (17-203)||(47645015-47645202)
chr4 (266-407)||(47645265-47645406)
chr4 (293-329)||(31805138-31805174)
chr4 (294-329)||(32303318-32303353)
chr4 (294-332)||(52487302-52487340)
chr4 (295-329)||(54591746-54591780)
chr4 (266-311)||(18539281-18539326)
[»] chr6 (2 HSPs)
chr6 (294-332)||(3401084-3401122)
chr6 (279-329)||(23775955-23776005)
[»] chr2 (4 HSPs)
chr2 (291-331)||(4059379-4059419)
chr2 (293-329)||(10288153-10288189)
chr2 (294-329)||(8329911-8329946)
chr2 (275-331)||(9365921-9365977)
[»] chr1 (8 HSPs)
chr1 (273-329)||(30198009-30198065)
chr1 (294-329)||(34157809-34157844)
chr1 (279-329)||(3697161-3697211)
chr1 (294-332)||(44161805-44161843)
chr1 (291-328)||(5043096-5043133)
chr1 (294-331)||(25994949-25994986)
chr1 (293-329)||(38019536-38019572)
chr1 (293-329)||(45350127-45350163)
[»] chr8 (3 HSPs)
chr8 (294-329)||(33115908-33115943)
chr8 (291-329)||(29913567-29913605)
chr8 (294-331)||(23587636-23587673)
[»] chr5 (3 HSPs)
chr5 (293-331)||(17489349-17489387)
chr5 (300-328)||(19526749-19526777)
chr5 (293-329)||(42964100-42964136)
[»] chr3 (5 HSPs)
chr3 (294-335)||(4189734-4189775)
chr3 (295-328)||(35176014-35176047)
chr3 (291-332)||(35987248-35987289)
chr3 (292-328)||(2381556-2381592)
chr3 (293-329)||(29800581-29800617)
[»] chr7 (5 HSPs)
chr7 (292-328)||(4560507-4560543)
chr7 (273-329)||(18227873-18227929)
chr7 (293-333)||(27125584-27125624)
chr7 (272-324)||(31480272-31480324)
chr7 (293-329)||(49167887-49167923)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 47645015 - 47645202
Alignment:
Q  17 cacaaacacgacaatatcaataatttataggaaacaacactactaccaaataaatcacgaatccacatatcattccatgtgcttttcttggtttgtctga 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47645015 cacaaacacgacaatatcaataatttataggaaacaacattactaccaaataaatcacgaatccacatatcattccatgtgcttttcttggtttgtctga 47645114  T
Q  117 caatgttc-taattttaaataattgctaaaatagtaacacatatcacaaaaataaattatatatgtatgaacattttttaaacaactg 203  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47645115 caatgttcataattttaaataattgctaaaatagtaacacaaatcacaaaaataaattatatatgtatgaacattttttaaacaactg 47645202  T

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Target: chr4; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 266 - 407
Target Start/End: Original strand, 47645265 - 47645406
Alignment:
Q  266 caatgtaagtatgaaagagaattattttaaaaattatcacaaaatagttatacaaatatcatttatcagatatacaatactagctcatcaaaaaccttat 365  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  47645265 caatgtaagtatgaaagagaattattttaaaaattatcataaaataattatataaatatcatttatcagatatacaatactagctcatccaaaaccttat 47645364  T
Q  366 attggttttctattttctttgcttggaaaataatatagataa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  47645365 attggttttctattttctttgcttggaaaataatatagataa 47645406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 31805138 - 31805174
Alignment:
Q  293 taaaaattatcacaaaatagttatacaaatatcattt 329  Q
    |||||||||||| ||||||||||||||||||||||||    
T  31805138 taaaaattatcataaaatagttatacaaatatcattt 31805174  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 32303318 - 32303353
Alignment:
Q  294 aaaaattatcacaaaatagttatacaaatatcattt 329  Q
    ||||||||||||||||||||| ||||||||||||||    
T  32303318 aaaaattatcacaaaatagttgtacaaatatcattt 32303353  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 52487302 - 52487340
Alignment:
Q  294 aaaaattatcacaaaatagttatacaaatatcatttatc 332  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  52487302 aaaaattatcacaaattagttgtacaaatatcatttatc 52487340  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 329
Target Start/End: Original strand, 54591746 - 54591780
Alignment:
Q  295 aaaattatcacaaaatagttatacaaatatcattt 329  Q
    ||||||||||||||||| |||||||||||||||||    
T  54591746 aaaattatcacaaaataattatacaaatatcattt 54591780  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 18539326 - 18539281
Alignment:
Q  266 caatgtaagtatgaaagagaattattttaaaaattatcacaaaata 311  Q
    |||||||||||| ||||| |||||||||||||||| || |||||||    
T  18539326 caatgtaagtataaaagataattattttaaaaattgtcgcaaaata 18539281  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 332
Target Start/End: Complemental strand, 3401122 - 3401084
Alignment:
Q  294 aaaaattatcacaaaatagttatacaaatatcatttatc 332  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  3401122 aaaaattatcacaaaatagttgtacaaatatcatttatc 3401084  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 23775955 - 23776005
Alignment:
Q  279 aaagagaattattttaaaaattatcacaaaatagttatacaaatatcattt 329  Q
    |||||||||||| |||||||||||||||||||| || || |||||||||||    
T  23775955 aaagagaattatcttaaaaattatcacaaaataattgtataaatatcattt 23776005  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 4059379 - 4059419
Alignment:
Q  291 tttaaaaattatcacaaaatagttatacaaatatcatttat 331  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  4059379 tttaaaaattatcataaaatagttatacaaatatcgtttat 4059419  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 10288189 - 10288153
Alignment:
Q  293 taaaaattatcacaaaatagttatacaaatatcattt 329  Q
    |||||||||||||||||||||| ||||||||||||||    
T  10288189 taaaaattatcacaaaatagttgtacaaatatcattt 10288153  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 8329911 - 8329946
Alignment:
Q  294 aaaaattatcacaaaatagttatacaaatatcattt 329  Q
    |||||||||||||||||||||||| |||||||||||    
T  8329911 aaaaattatcacaaaatagttatataaatatcattt 8329946  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 9365977 - 9365921
Alignment:
Q  275 tatgaaagagaattattttaaaaattatcacaaaatagttatacaaatatcatttat 331  Q
    ||||| ||||| || ||||||||||| ||| ||||||||| ||||||||| ||||||    
T  9365977 tatgagagagagttgttttaaaaattgtcaaaaaatagttgtacaaatattatttat 9365921  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 30198065 - 30198009
Alignment:
Q  273 agtatgaaagagaattattttaaaaattatcacaaaatagttatacaaatatcattt 329  Q
    ||||||||||| |||| ||| |||| || ||||||||||||| ||||||||||||||    
T  30198065 agtatgaaagataattgtttaaaaatttgtcacaaaatagttgtacaaatatcattt 30198009  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 329
Target Start/End: Complemental strand, 34157844 - 34157809
Alignment:
Q  294 aaaaattatcacaaaatagttatacaaatatcattt 329  Q
    |||||||||||||||||| |||||||||||||||||    
T  34157844 aaaaattatcacaaaataattatacaaatatcattt 34157809  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 3697161 - 3697211
Alignment:
Q  279 aaagagaattattttaaaaattatcacaaaatagttatacaaatatcattt 329  Q
    ||||||||||||||||||| || |||  |||||||| ||||||||||||||    
T  3697161 aaagagaattattttaaaagttgtcaacaaatagttgtacaaatatcattt 3697211  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 44161805 - 44161843
Alignment:
Q  294 aaaaattatcacaaaatagttatacaaatatcatttatc 332  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  44161805 aaaaattataccaaaatagttatacaaatatcatttatc 44161843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 5043133 - 5043096
Alignment:
Q  291 tttaaaaattatcacaaaatagttatacaaatatcatt 328  Q
    ||||||||||||||||||||| || |||||||||||||    
T  5043133 tttaaaaattatcacaaaataattgtacaaatatcatt 5043096  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 25994949 - 25994986
Alignment:
Q  294 aaaaattatcacaaaatagttatacaaatatcatttat 331  Q
    |||||||||||||||||| || ||||||||||||||||    
T  25994949 aaaaattatcacaaaataattgtacaaatatcatttat 25994986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 38019536 - 38019572
Alignment:
Q  293 taaaaattatcacaaaatagttatacaaatatcattt 329  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  38019536 taaaagttatcacaaaataattatacaaatatcattt 38019572  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 45350127 - 45350163
Alignment:
Q  293 taaaaattatcacaaaatagttatacaaatatcattt 329  Q
    ||||||||||||||||||| || ||||||||||||||    
T  45350127 taaaaattatcacaaaataattgtacaaatatcattt 45350163  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 329
Target Start/End: Complemental strand, 33115943 - 33115908
Alignment:
Q  294 aaaaattatcacaaaatagttatacaaatatcattt 329  Q
    |||||||||||||||||| |||||||||||||||||    
T  33115943 aaaaattatcacaaaataattatacaaatatcattt 33115908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 329
Target Start/End: Complemental strand, 29913605 - 29913567
Alignment:
Q  291 tttaaaaattatcacaaaatagttatacaaatatcattt 329  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  29913605 tttaaaaattatcataaaatagttgtacaaatatcattt 29913567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 23587673 - 23587636
Alignment:
Q  294 aaaaattatcacaaaatagttatacaaatatcatttat 331  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  23587673 aaaaattgtcacaaaattgttatacaaatatcatttat 23587636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 17489387 - 17489349
Alignment:
Q  293 taaaaattatcacaaaatagttatacaaatatcatttat 331  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  17489387 taaaaattatcaaaaaatagttgtacaaatatcatttat 17489349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 328
Target Start/End: Complemental strand, 19526777 - 19526749
Alignment:
Q  300 tatcacaaaatagttatacaaatatcatt 328  Q
    |||||||||||||||||||||||||||||    
T  19526777 tatcacaaaatagttatacaaatatcatt 19526749  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 42964100 - 42964136
Alignment:
Q  293 taaaaattatcacaaaatagttatacaaatatcattt 329  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  42964100 taaaaattatcaaaaaatagttatgcaaatatcattt 42964136  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 4189775 - 4189734
Alignment:
Q  294 aaaaattatcacaaaatagttatacaaatatcatttatcaga 335  Q
    |||||||||||||||||| || |||||||||||||| |||||    
T  4189775 aaaaattatcacaaaataattctacaaatatcatttctcaga 4189734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 328
Target Start/End: Original strand, 35176014 - 35176047
Alignment:
Q  295 aaaattatcacaaaatagttatacaaatatcatt 328  Q
    ||||||||||||||||||||||| ||||||||||    
T  35176014 aaaattatcacaaaatagttataaaaatatcatt 35176047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 35987289 - 35987248
Alignment:
Q  291 tttaaaaattatcacaaaatagttatacaaatatcatttatc 332  Q
    ||||||| |||||||||||||||| ||||||||||| |||||    
T  35987289 tttaaaagttatcacaaaatagttgtacaaatatcacttatc 35987248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 2381592 - 2381556
Alignment:
Q  292 ttaaaaattatcacaaaatagttatacaaatatcatt 328  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  2381592 ttaaaaaatatcacaaaatagttatataaatatcatt 2381556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 29800581 - 29800617
Alignment:
Q  293 taaaaattatcacaaaatagttatacaaatatcattt 329  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  29800581 taaaaattatcacaaagtagttgtacaaatatcattt 29800617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 4560507 - 4560543
Alignment:
Q  292 ttaaaaattatcacaaaatagttatacaaatatcatt 328  Q
    |||||||||||||||||||||||  ||||||||||||    
T  4560507 ttaaaaattatcacaaaatagttgcacaaatatcatt 4560543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 18227873 - 18227929
Alignment:
Q  273 agtatgaaagagaattattttaaaaattatcacaaaatagttatacaaatatcattt 329  Q
    ||||||| |||||  ||||| ||||||||||| ||||||||| ||||| ||||||||    
T  18227873 agtatgagagagagatatttaaaaaattatcataaaatagttgtacaactatcattt 18227929  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 27125584 - 27125624
Alignment:
Q  293 taaaaattatcacaaaatagttatacaaatatcatttatca 333  Q
    |||||||||| ||||||||||| || |||||||||||||||    
T  27125584 taaaaattattacaaaatagttgtagaaatatcatttatca 27125624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 31480272 - 31480324
Alignment:
Q  272 aagtatgaaagagaattattttaaaaattatcacaaaatagttatacaaatat 324  Q
    |||||| ||| |||||||||  ||||||||| | |||||||||||||||||||    
T  31480272 aagtataaaaaagaattattacaaaaattattataaaatagttatacaaatat 31480324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 49167887 - 49167923
Alignment:
Q  293 taaaaattatcacaaaatagttatacaaatatcattt 329  Q
    ||||||||||||||||||| || ||||||||||||||    
T  49167887 taaaaattatcacaaaataattgtacaaatatcattt 49167923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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