View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2040_high_5 (Length: 363)
Name: NF2040_high_5
Description: NF2040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2040_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 3 - 359
Target Start/End: Original strand, 24708345 - 24708701
Alignment:
| Q |
3 |
actagcagtaatgagagtaacaacgtcactgactttaaaatactggaaaaggatactttccgtagacttataatttggccacaccaatctccgatgtcca |
102 |
Q |
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| T |
24708345 |
actagcagtaatgagagtaacaacgtcactgactttaaaatactggaaaaggatactttccgtagacttataatttggccacaccaatctccgatgtcca |
24708444 |
T |
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| Q |
103 |
aatcctcccctgcctctctctcctctaaagaaaatcattttttcaaaagctatttatatcaacttctcattcgaagttgttatctgannnnnnnnattct |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24708445 |
aatcctcccctgcctctctctcctctaaagaaaatcattttttcaaaagctatttatatcaacttctcattcgaagttgttatctgattttttttattct |
24708544 |
T |
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| Q |
203 |
cattttttctgaaaagttgtaacgagcatatacaatactcttaaaaatgtttataatgttcaatattgttgttgaattgaatgttactcttattttaatg |
302 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24708545 |
cattttttctgaaaagttgtaacgaacatatacaatactcttaaaaatgtttatagtgttcaatattgttgttgaattgaatgttactcttattttaatg |
24708644 |
T |
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| Q |
303 |
ggatttatctcgaacccaattttgcaatagagatagaagagaaaagaagaatagtgt |
359 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24708645 |
ggatttatctggaacccaattttgcaatagagatagaagagaaaagaagaatggtgt |
24708701 |
T |
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