View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2040_low_14 (Length: 239)
Name: NF2040_low_14
Description: NF2040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2040_low_14 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43014169 - 43013948
Alignment:
| Q |
1 |
tgtaagaacacattcaaacccagaaaatcaagagagagaaaatcataataccaagaaccataatcatttatttttactaagaatcagatctggtattata |
100 |
Q |
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| T |
43014169 |
tgtaagaacacactcgaacccagaaaatcaagagagagaaaatcataataccaaaaaccataatcatttatttttactaagaatcagatctggtattata |
43014070 |
T |
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| Q |
101 |
gtatatcttcattttccacctcaactacaagaagaagnnnnnnnnncaaatatcaccaacaccataaccagatcggtgttgcttctgaaggcaactagat |
200 |
Q |
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| T |
43014069 |
gtatatcttcattttccacctcaactacaagaagaagaaaaaaaaacaaatatcaccaacaccataaccagatcggtgttgcttctgagggcaactagat |
43013970 |
T |
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| Q |
201 |
caacaacatctacaaaccacac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
43013969 |
caacaacatctacaaaccacac |
43013948 |
T |
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Target: scaffold0007 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 233560 - 233384
Alignment:
| Q |
42 |
atcataataccaagaaccataatcatttatttttactaagaatcagatctggtattatagtatatcttcattttccacctcaactacaagaagaagnnnn |
141 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
233560 |
atcataataccaaaaaccataatcatttatttttactaagaatcagatctggtattatagtatatcttcattttccacctcaactacaagaagaag-aaa |
233462 |
T |
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| Q |
142 |
nnnnncaaatatcaccaacaccataaccagatcggtgttgcttctgaaggcaactagatcaacaacatctacaaacca |
219 |
Q |
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| T |
233461 |
aaaaacaaatatcaccaacaccagaaccagatcggtgttgcttctgaaggcaactagatcaacaacatctacaaacca |
233384 |
T |
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