View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2040_low_2 (Length: 543)
Name: NF2040_low_2
Description: NF2040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2040_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 253 - 524
Target Start/End: Complemental strand, 34813329 - 34813059
Alignment:
| Q |
253 |
atatatgtattgtcaatatgattaggaacttaataaagacagaaaaattgccccttgttaaaaaatatagtatgagaactagtaggggaatgtttagtag |
352 |
Q |
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| T |
34813329 |
atatatgtattgtcaatatgattaggaacttaataaagacagaaaaattgccccttgttaaaaaatatagtatgagaactag-aggggaatgtttagtag |
34813231 |
T |
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| Q |
353 |
catggaacatgaggcaacgcattagtaattaactgtttgtgctctgcattgtttgaggcacaaacaggatttgaactcatcatgaccaaaaaagattgtt |
452 |
Q |
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| T |
34813230 |
catggaacatgaggcaacacattagtaattaactttttgtgctctgcattatttgaggcacaaacaggatttgaactcatcatgaccaaaaaagattgtt |
34813131 |
T |
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| Q |
453 |
gctagactctctaccagtacactacctgccagggccggaccttgggctatgcaaaccgctctatggaactgg |
524 |
Q |
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| T |
34813130 |
gctagactctctaccagtacactatctgccagggccggaccttagggtatgcaaaccgctctatggaactgg |
34813059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 34815526 - 34815285
Alignment:
| Q |
11 |
caaaggtctgtttactgaattcagtgagaaaaacttcaatcacacagtctatactacatcatgcaggtttgactatgcaaatgaaaagaaaaagcnnnnn |
110 |
Q |
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| T |
34815526 |
caaaggtctgtttactgaattcagtgagaaaaacttcaatcacacagtgtatactacatcatgcaggtttgactatgcaaatgaaaagaaaaagcttttt |
34815427 |
T |
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| Q |
111 |
nnccnnnnnnnnnntgtgatgcaatgaatatattctttatgggactgggatttaattcctcagaacnnnnnnngtactttaggttatatggtgaacatct |
210 |
Q |
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| T |
34815426 |
ttccaaaaaaaaa-tgtgatgcaatgaatatcttctttatgggactgggatttaattcctcagaacaaaaaaagtactttaggttatatggtgaacatct |
34815328 |
T |
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| Q |
211 |
ttttgaatattcaaattatgactgatcaatttataggtaacta |
253 |
Q |
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| T |
34815327 |
ttttgaatattcaaattatgactgatcaatttataggtaacta |
34815285 |
T |
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