View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2040_low_6 (Length: 328)

Name: NF2040_low_6
Description: NF2040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2040_low_6
NF2040_low_6
[»] chr4 (8 HSPs)
chr4 (1-312)||(9030684-9030995)
chr4 (1-311)||(9000129-9000439)
chr4 (1-312)||(8954834-8955145)
chr4 (1-311)||(8979171-8979481)
chr4 (1-289)||(8900541-8900829)
chr4 (12-312)||(8966230-8966530)
chr4 (7-289)||(8914452-8914734)
chr4 (7-248)||(8929374-8929615)
[»] chr5 (2 HSPs)
chr5 (1-289)||(20074000-20074288)
chr5 (12-289)||(9400249-9400526)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 9030995 - 9030684
Alignment:
Q  1 aagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9030995 aagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctc 9030896  T
Q  101 tctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatgg 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9030895 tctgaatagcccaagcattcacatacaatattgtcctggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatgg 9030796  T
Q  201 ggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattctttttcacgtcccaag 300  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||| | |||||| ||| |||||||    
T  9030795 ggctggtagatgcaatcttaacgtctctttaatcactgcattcaaataaggtaaattttgaagatcaccttcatctaaataatcttttgcacctcccaag 9030696  T
Q  301 tttctaatttct 312  Q
    ||||| ||||||    
T  9030695 tttctgatttct 9030684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 9000129 - 9000439
Alignment:
Q  1 aagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctc 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||| ||||||    
T  9000129 aagggtattagttcaaaatcttgtccattaaaatttatagaactttctaagaatctttcaggataaaattcttctggatttttccaaacattagggtctc 9000228  T
Q  101 tctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||  || |  ||    
T  9000229 tctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccacttatagtgcaattttcacgtgattctctttgcataagtagagg 9000328  T
Q  201 ggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattctttttcacgtcccaag 300  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||     
T  9000329 ggctggtaggtgcaatcttagcgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaaatctttttcacctcccaaa 9000428  T
Q  301 tttctaatttc 311  Q
    |||||||||||    
T  9000429 tttctaatttc 9000439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 8955145 - 8954834
Alignment:
Q  1 aagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctc 100  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||  ||||| ||   | ||||    
T  8955145 aagggtattagttcaaagtcttgtccaataaaatttatagaactttctaagaatctctcaggataaaattcttctgggtttatccaaatatctggatctc 8955046  T
Q  101 tctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatgg 200  Q
    ||||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||| |||| || |||||||||   ||||| || | ||  || | |||    
T  8955045 tctgaatagcccaagcatttacatataatattgtctttgcaggaatgttgtatccacttatggtacaattttcaatagattcccttggcacaagtagtgg 8954946  T
Q  201 ggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattctttttcacgtcccaag 300  Q
    ||||||||| || |||||||  ||||||||||  |  ||||||||||||||  ||||||||||||||||||||| |||||| ||||||| |  ||||||     
T  8954945 ggctggtaggtgtaatcttagtgtctctttaactatagccttcaaataaggacaattttgaatatcatcttcatataaaaaatcttttttaactcccaaa 8954846  T
Q  301 tttctaatttct 312  Q
    ||||| ||||||    
T  8954845 tttcttatttct 8954834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 8979481 - 8979171
Alignment:
Q  1 aagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctc 100  Q
    |||||||||||||| ||||| |||||| ||||||||||||||||||||| |||||| || ||||||||||||||||  |||| ||||  |||| | ||||    
T  8979481 aagggtattagttcgaaatcatgtccaataaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaagtattaggatctc 8979382  T
Q  101 tctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatgg 200  Q
    | |||||||||||  | || |||||||||||||| | ||||||||||||||| ||||| ||| ||||  |||| | ||||||||| |  |  |||| |||    
T  8979381 tttgaatagcccagacgtttacatacaatattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcagtgg 8979282  T
Q  201 ggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattctttttcacgtcccaag 300  Q
     |||||||| | ||||||||| |||||||| |||||||||||||||||  |  |||||||||||||||||||||||||||| ||||||| || |||||||    
T  8979281 agctggtaggtacaatcttaatgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaag 8979182  T
Q  301 tttctaatttc 311  Q
    || ||||||||    
T  8979181 ttcctaatttc 8979171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 8900541 - 8900829
Alignment:
Q  1 aagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctc 100  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||   |||||     
T  8900541 aagggaattagttcaaaatcttgtccataaaaatttatagaactttctaaaaatctttcaggataaaactcttctgggtttttccaaacatctgggtctg 8900640  T
Q  101 tctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatgg 200  Q
    | ||||||||||||||||||||| |||  || | ||| || ||||| | ||| ||| ||||| |||| ||||| | || |||||| | ||  ||||||||    
T  8900641 tatgaatagcccaagcattcacaaacacaatcgcctttgcaggaatttggtagccacttataatgcacttttcccttgtttctcttggcacaagcaatgg 8900740  T
Q  201 ggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattcttttt 289  Q
    | ||||||| | |||||| || |||||||| |||||||||||||| || |  |||||||| |||||||||||||||| |||||||||||    
T  8900741 gcctggtaggtacaatctcaatgtctcttttatcactgccttcaagtaggagaaattttgtatatcatcttcatctataaattcttttt 8900829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 8966230 - 8966530
Alignment:
Q  12 ttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctctctgaatagcc 111  Q
    ||||||||||||||||  ||||||  | |||| ||| |||||||| || |||||||| |||||||  |||| ||||  | |  ||||||| |||||||||    
T  8966230 ttcaaaatcttgtccaagaaaattcgtcgaacattccaagaatctctcgggataaaactcttctggatttttccaattacttgggtctctttgaatagcc 8966329  T
Q  112 caagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatggggctggtagat 211  Q
    |||||||||||||||| |||||| ||||||||||| ||||| ||| ||||| |||| ||||| | ||||||||| |  |  || | |||||  ||||| |    
T  8966330 caagcattcacatacactattgtgttggctggaatcttgtaaccacttataatgcacttttctcttgattctcttggaacaagtagtggggtaggtaggt 8966429  T
Q  212 gcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattctttttcacgtcccaagtttctaatttc 311  Q
    ||||||| ||||||||||| ||||||||||| ||||| || |||||||||||||||| ||| ||||  |||||||||| || ||||||||||||||||||    
T  8966430 gcaatctcaacgtctcttttatcactgcctttaaatatgggaaattttgaatatcattttcgtctatgaattcttttttacttcccaagtttctaatttc 8966529  T
Q  312 t 312  Q
    |    
T  8966530 t 8966530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 7 - 289
Target Start/End: Original strand, 8914452 - 8914734
Alignment:
Q  7 attagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctctctgaa 106  Q
    |||||||||||||||||||||  |||||||| |||||||||||| ||||| || |||||||||||||||| ||||| |||||||||   |||| | ||||    
T  8914452 attagttcaaaatcttgtccatgaaaatttaaagaactttctaaaaatctctctggataaaattcttctgggtttttccaaacatttgagtctgtatgaa 8914551  T
Q  107 tagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatggggctgg 206  Q
    ||||||||||||||||| ||| ||| | ||| || ||||| | | | |||||||||||||| ||||||  || |||||| | |   ||||||||||||||    
T  8914552 tagcccaagcattcacaaacactatcgcctttgcgggaatttggaagccatttatagtgcatttttcagttgtttctcttggcgcaagcaatggggctgg 8914651  T
Q  207 tagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattcttttt 289  Q
     || | |||||| || |||||||| ||||||||||| || || |  |||||| | |||||||||||||||| |||||||||||    
T  8914652 caggtacaatctcaatgtctcttttatcactgcctttaagtaggacaaatttcgtatatcatcttcatctataaattcttttt 8914734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 8929374 - 8929615
Alignment:
Q  7 attagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctctctgaa 106  Q
    |||| ||||||||| ||||||  ||||||||||||||| ||||||||||| ||||||||||| ||||| |  | || |||||  | |  |||||| ||||    
T  8929374 attaattcaaaatcatgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtctctatgaa 8929473  T
Q  107 tagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatggggctgg 206  Q
    ||| ||||||||||||||| | |||||| || || ||||||| ||| |||  || | |||| ||||| | || |||||| | ||  |||||||| |||||    
T  8929474 tagaccaagcattcacatatactattgtttttgcaggaatatggtagccacctacaatgcacttttcccttgtttctcttggcaaaagcaatggagctgg 8929573  T
Q  207 tagatgcaatcttaacgtctctttaatcactgccttcaaata 248  Q
    ||| | |||||| || |||||||| ||||| |||||||||||    
T  8929574 taggtacaatctcaatgtctcttttatcaccgccttcaaata 8929615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 20074000 - 20074288
Alignment:
Q  1 aagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctc 100  Q
    ||||| ||||||||||||||||||||   ||||||||| ||||||||||| ||||| |||||||||||||||||||  |||| |||||||||| |||||     
T  20074000 aagggaattagttcaaaatcttgtccgtgaaaatttatcgaactttctaaaaatctctcaggataaaattcttctggatttttccaaacattagggtctg 20074099  T
Q  101 tctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatgg 200  Q
    | ||||||||||||||||||||| ||| ||  | ||| || ||||| | ||| |||  ||||||||| ||||| | || |||||| | ||  ||||||||    
T  20074100 tatgaatagcccaagcattcacaaacactaccgcctttgccggaatttggtagccacctatagtgcacttttcccttgtttctcttggcacaagcaatgg 20074199  T
Q  201 ggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattcttttt 289  Q
    |||||| |  | |||||| |  |||||||| |||||||||||||| || |  |||||||| |||||||||||||||| |||||||||||    
T  20074200 ggctggcaagtacaatctcagtgtctcttttatcactgccttcaagtaggagaaattttgtatatcatcttcatctataaattcttttt 20074288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 289
Target Start/End: Original strand, 9400249 - 9400526
Alignment:
Q  12 ttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctctctgaatagcc 111  Q
    |||||| |||||||||  ||||||||||||||||||||||||||| || |||||||| |||||||  | || ||||||||||  |||||| |||||||||    
T  9400249 ttcaaagtcttgtccaagaaaatttatagaactttctaagaatctctctggataaaactcttctggatctttccaaacattagagtctctatgaatagcc 9400348  T
Q  112 caagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatggggctggtagat 211  Q
    |||||||||||||||| ||||||||| |||||||| | ||| |||  |||||||||  ||||   ||| || || | ||| ||||||||   ||||||      
T  9400349 caagcattcacatacactattgtctttgctggaatctggtaaccacctatagtgcacatttccattgactcccttggcagtagcaatggatttggtagga 9400448  T
Q  212 gcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattcttttt 289  Q
      ||||| || |||||||| || ||||||||||| || |  |||||||| |||||||||||||||||||| |||||||    
T  9400449 ataatctcaatgtctcttttatgactgccttcaagtaggagaaattttgtatatcatcttcatctaaaaagtcttttt 9400526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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