View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2040_low_7 (Length: 322)
Name: NF2040_low_7
Description: NF2040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2040_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 31810529 - 31810232
Alignment:
| Q |
20 |
cctaactacttcatcaaggaaatcaacatctgcaccagcatcaagcaagagcttaacaatctcaaatttggatttagagccaccagcaacagcacaatgt |
119 |
Q |
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| T |
31810529 |
cctaactacttcatcaaggaaatcaacatctgcaccagcatcaagcaagagcttaacaatctcaaatttggatttagagccaccagcaacagcacaatgt |
31810430 |
T |
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| Q |
120 |
aatgcagtgacattttcactaccaattgccatgttcacattaaccatgtttgtttcaatgatatatttgaccaccctaatgcttccaaacaaagaagcaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31810429 |
aatgcagtgacattttcactaccaattgccatgttcacattaaccatgtttgtttcaatgatatatttgaccaccctaatgcttccaaacaaagaagcaa |
31810330 |
T |
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| Q |
220 |
tcataaggggtgtcctcttttcataacacattttctttgatcctatttttctacagtaccaaaaccctgcctcatttacatcatagccctttgcttct |
317 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31810329 |
tcataaggggtgttctcttttcataacacattttctttgatcctatttttctacagtaccaaaaccctgcctcatttacatcatagcccttttcttct |
31810232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 25817891 - 25817828
Alignment:
| Q |
199 |
tgcttccaaacaaagaagcaatcataaggggtgtcctcttttcataacacattttctttgatcc |
262 |
Q |
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| T |
25817891 |
tgcttccaaacaaggcagcaatcataagaggggtcctttcttcataactcatttcctttgatcc |
25817828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 301
Target Start/End: Complemental strand, 35643265 - 35643152
Alignment:
| Q |
188 |
gaccaccctaatgcttccaaacaaagaagcaatcataaggggtgtcctcttttcataacacattttctttgatcctatttttctacagtaccaaaaccct |
287 |
Q |
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|||||| ||| |||||||||||| |||||||||||||| || ||||||||||| | ||| ||||| ||||| ||| |||||| |||||||| ||| |
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| T |
35643265 |
gaccactctagtgcttccaaacatggaagcaatcataagaggagtcctcttttcggattccatcttcttcgatccaattcttctaccataccaaaagcct |
35643166 |
T |
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| Q |
288 |
gcctcatttacatc |
301 |
Q |
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||||||| ||||| |
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| T |
35643165 |
tcctcattcacatc |
35643152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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