View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2040_low_8 (Length: 295)
Name: NF2040_low_8
Description: NF2040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2040_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 6407456 - 6407188
Alignment:
| Q |
8 |
gagcagagatatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaagccacatgagtt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6407456 |
gagcagagatatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaagccacatgagtt |
6407357 |
T |
|
| Q |
108 |
caacagatgcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaa |
207 |
Q |
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|| |||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6407356 |
cagcagatgtagtggctacagcacggtattcagcctcagttgatgatcgtgctacagtacgttgtttttgtgatagccaagaaataggattacctccaaa |
6407257 |
T |
|
| Q |
208 |
aaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgcatctgtaaaggc |
276 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6407256 |
aaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgcatctgtaaaggc |
6407188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 40094474 - 40094636
Alignment:
| Q |
8 |
gagcagagatatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaagccacatgagtt |
107 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40094474 |
gagcagagacatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaagccacgtgagtt |
40094573 |
T |
|
| Q |
108 |
caacagatgcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgtt |
170 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40094574 |
cagcagatgcagtggctacagcacggtattcagcctcggttgatgatcgtgctacagtacgtt |
40094636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 166 - 276
Target Start/End: Original strand, 40112935 - 40113045
Alignment:
| Q |
166 |
acgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgca |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40112935 |
acgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgca |
40113034 |
T |
|
| Q |
266 |
tctgtaaaggc |
276 |
Q |
| |
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||||||||||| |
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|
| T |
40113035 |
tctgtaaaggc |
40113045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 270
Target Start/End: Complemental strand, 2662641 - 2662538
Alignment:
| Q |
167 |
cgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgcat |
266 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||||||||||| | | || |||||||| ||||| || || |||||||| ||||| || ||||| || |||| |
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| T |
2662641 |
cgttgtttccttgagagccaagaaataggattacctccaagatatattagatatgcagatgtggaagtacggtcatcgatattgccaccccaatcagcat |
2662542 |
T |
|
| Q |
267 |
ctgt |
270 |
Q |
| |
|
|||| |
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|
| T |
2662541 |
ctgt |
2662538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 9004766 - 9004827
Alignment:
| Q |
182 |
agccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatc |
243 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||||| ||||| || || ||||| ||||| |
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| T |
9004766 |
agccaagagataggattaccaccaaaaaatataagatacgctgaagtggatgtgcgatcatc |
9004827 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 653902 - 654161
Alignment:
| Q |
7 |
ggagcagagatatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttg-aagcaaattttgaagccacatgag |
105 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||| || | |||||||| |||| ||||| | |||| || || ||| | || ||| |||||| || |
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| T |
653902 |
ggagcagagatatgttgcaccaacgttgtcacatagtagcaatggtggttttgacactggtagacgaagttcatgtaagagacttgtga-gccacactag |
654000 |
T |
|
| Q |
106 |
ttcaacagatgcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctcca |
205 |
Q |
| |
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|||| ||| ||||||||| || |||||||||||||||| ||||| || ||||||||||| |||||||| ||||||| |||||| | || |||| | || |
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| T |
654001 |
ttcagcagttgcagtggccactgcacggtattcagcctcagttgaaga-cgtgctacagtgcgttgtttgcgtgataaccaagaggtggggttactttca |
654099 |
T |
|
| Q |
206 |
aaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgcatc |
267 |
Q |
| |
|
| ||| || |||||||| |||| || ||||| || |||||||| || |||||||||||||| |
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|
| T |
654100 |
agaaaaatgagatatgcaaatgtggatgtgcgatcttccatattgccaccccagtctgcatc |
654161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 3690402 - 3690522
Alignment:
| Q |
116 |
gcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataa |
215 |
Q |
| |
|
|||||||| || |||| ||||| ||||| || ||||||||||| || ||||||||||| | ||| ||||| || ||||||||||| |||||||| |||| |
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| T |
3690402 |
gcagtggcaactgcacgatattctgcctcagtggatgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataa |
3690501 |
T |
|
| Q |
216 |
gatatgctgatgttgaggtgc |
236 |
Q |
| |
|
|||||||||||| ||||||| |
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|
| T |
3690502 |
tatatgctgatgtggaggtgc |
3690522 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 32074185 - 32074058
Alignment:
| Q |
116 |
gcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataa |
215 |
Q |
| |
|
|||||||| || |||| ||||| ||||| | ||||||||||| || ||||||||||| | ||| ||||| || ||||||||||| |||||||| |||| |
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|
| T |
32074185 |
gcagtggcaactgcacgatattctgcctcaatggatgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataa |
32074086 |
T |
|
| Q |
216 |
gatatgctgatgttgaggtgcggtcatc |
243 |
Q |
| |
|
|||||||||||| |||||||| ||||| |
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|
| T |
32074085 |
tatatgctgatgtggaggtgcgatcatc |
32074058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 270
Target Start/End: Complemental strand, 3019741 - 3019605
Alignment:
| Q |
134 |
tattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgagg |
233 |
Q |
| |
|
||||||||||| || ||||| | || || || |||||||| | ||| ||||||||||||||||||||||||||| | || |||||||| ||||| || | |
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|
| T |
3019741 |
tattcagcctcagtggatgacctagcaacggtgcgttgtttccttgagagccaagaaataggattacctccaaaatatattagatatgcagatgtggaag |
3019642 |
T |
|
| Q |
234 |
tgcggtcatccatatttcctccccagtctgcatctgt |
270 |
Q |
| |
|
| |||||||| ||||| || |||| || |||||||| |
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|
| T |
3019641 |
tacggtcatcaatattgccatcccaatcagcatctgt |
3019605 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 28083395 - 28083522
Alignment:
| Q |
116 |
gcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataa |
215 |
Q |
| |
|
|||||||| || |||| ||||| ||||| | ||||||||||| || ||||||||||| | ||| ||||| || ||||||||||| |||||||| |||| |
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|
| T |
28083395 |
gcagtggcaactgcacgatattctgcctcattggatgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataa |
28083494 |
T |
|
| Q |
216 |
gatatgctgatgttgaggtgcggtcatc |
243 |
Q |
| |
|
|||||||||||| |||||||| ||||| |
|
|
| T |
28083495 |
tatatgctgatgtggaggtgcgatcatc |
28083522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 1109102 - 1109163
Alignment:
| Q |
182 |
agccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatc |
243 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||||| ||||| || || ||||| ||||| |
|
|
| T |
1109102 |
agccaagagataggattaccaccaaaaaatataagatacgctgaagtggatgtgcgatcatc |
1109163 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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