View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2040_low_9 (Length: 278)
Name: NF2040_low_9
Description: NF2040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2040_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 15788218 - 15787972
Alignment:
| Q |
18 |
atatatacatgaaaaagattaattatctctaccgtttcatacctacatgttatgctacagcccatttcacagtagcaaggaggaggaggcacataaagtt |
117 |
Q |
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| T |
15788218 |
atatatacatgaaaaagattaaatatctctaccgtttcatacctacatgttatgctacagcccatttcacagtagcaaggaggaggaggcacataaagtt |
15788119 |
T |
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| Q |
118 |
gattgatagtgaaaaccattttgtttttctttaagctttgtagag-tttatggttaggattatcaagttattgtaagtttgaaagaagaaatttctgtct |
216 |
Q |
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| T |
15788118 |
gattgatagtgaaaaccattttgtttttctttaagctttgtagagttttatggttaggattatcaagttattgtaagtttgaaagaagaaatttctgtct |
15788019 |
T |
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| Q |
217 |
ttgaccaagaaaattattagtccataaattctatggccataaatgtg |
263 |
Q |
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| T |
15788018 |
ttgaccaagaaaattattagtccataaattctatggccataaatgtg |
15787972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 15786864 - 15786790
Alignment:
| Q |
189 |
gtaagtttgaaagaagaaatttctgtctttgaccaagaaaattattagtccataaattctatggccataaatgtg |
263 |
Q |
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| T |
15786864 |
gtaagtttgaaagaagaaatttctgtctttgaccaagaaaattattagtccataaattcaatggccataaatgtg |
15786790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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