View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20410_low_3 (Length: 324)

Name: NF20410_low_3
Description: NF20410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20410_low_3
NF20410_low_3
[»] chr3 (15 HSPs)
chr3 (10-307)||(22632402-22632699)
chr3 (10-281)||(22631032-22631303)
chr3 (10-305)||(22468487-22468782)
chr3 (14-307)||(22431688-22431978)
chr3 (10-307)||(22368449-22368743)
chr3 (10-307)||(22358539-22358839)
chr3 (10-303)||(22636044-22636340)
chr3 (11-307)||(22443276-22443572)
chr3 (35-281)||(22437197-22437443)
chr3 (145-225)||(22459099-22459179)
chr3 (145-225)||(22482080-22482160)
chr3 (254-307)||(22630976-22631029)
chr3 (153-191)||(22207795-22207833)
chr3 (27-83)||(22459220-22459276)
chr3 (27-83)||(22482201-22482257)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 22632699 - 22632402
Alignment:
Q  10 aagaaaatcaaagacatgatcaagcagctgatagaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacatcaatcttctg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22632699 aagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacattgaagatgtcattgatgattatatctttcttgaggaacaacaatcttctg 22632600  T
Q  110 atcctggatgtgctgctggtgcaattgacttggtgaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagaga 209  Q
    |||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||    
T  22632599 atcctggatgtgctactggagctattgacttggtgaaaactaagattcttcgtctccaaattgctgacaagattcagaacatcaaatccagaattagaga 22632500  T
Q  210 aataaaagaaacaagtaaaaaagatcatggtttccacatccaaccttctccggataaaccatcaagtagttcggaaacaaacaaaaacgcctcattat 307  Q
    |||||||||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| | |||||||| ||| ||||||||||    
T  22632499 aataaaagaaacaagtgaaaaagatcatggcttccacatccaatcttcttcggataaaccatcaagtagttctgcaacaaacagaaatgcctcattat 22632402  T

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Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 22631303 - 22631032
Alignment:
Q  10 aagaaaatcaaagacatgatcaagcagctgatagaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacatcaatcttctg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||  || |||    
T  22631303 aagaaaatcaaagacatgatcaagcagctgatagaagcatctttccacatggaagatgtcattgatgattatatcttccatgaggaacaacatgctcctg 22631204  T
Q  110 atcctggatgtgctgctggtgcaattgacttggtgaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagaga 209  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  22631203 atcctggatgtgctgctggagccgttgacttggtgaaaactaagattcttcgtctccaaattgcttacaagattcagaacatcaaatcccaaattagaga 22631104  T
Q  210 aataaaagaaacaagtaaaaaagatcatggtttccacatccaaccttctccggataaaccatcaagtagttc 281  Q
    |||||||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  22631103 aataaaagaaacaagtgaaaaagatcatggcttccacatccaatcttcttcggataaaccatcaagtagttc 22631032  T

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Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 22468782 - 22468487
Alignment:
Q  10 aagaaaatcaaagacatgatcaagcagctgatagaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacatcaatcttctg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||  |||||||||||||||| ||||||||||| ||||||||||    
T  22468782 aagaaaatcaaagacatgatcaagcagctgatagaagcatcttatcacatagaagatgtggttgatgattatatcttacttgaggaacaacaatcttctg 22468683  T
Q  110 atcctggatgtgctgctggtgcaattgacttggtgaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagaga 209  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |||||    
T  22468682 atcctggatgtgctgctggtgctgttgacttggtgaaaactaagatccttcgtctccaaataacttacaagattcagaacatcaagtcccgaatcagaga 22468583  T
Q  210 aataaaagaaacaagtaaaaaagatcatggtttccacatccaaccttctccggataaaccatcaagtagttcggaaacaaacaaaaacgcctcatt 305  Q
    ||||||||||||||||  |||||||||||| ||| |||||||| ||||| | |||||||||||||| ||||| | |||||||| ||||||||||||    
T  22468582 aataaaagaaacaagtgcaaaagatcatggcttcaacatccaatcttcttcagataaaccatcaagcagttctgcaacaaacagaaacgcctcatt 22468487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 22431978 - 22431688
Alignment:
Q  14 aaatcaaagacatgatcaagcagctgatagaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacatcaatcttctgatcc 113  Q
    |||||||||  | |||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  22431978 aaatcaaagcaaagatcaaacagctgatagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaacaatcttctgatcc 22431879  T
Q  114 tggatgtgctgctggtgcaattgacttggtgaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagagaaata 213  Q
    |||||| |||||||||    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22431878 tggatgcgctgctggtc---ttgacttgatcaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagtgaaata 22431782  T
Q  214 aaagaaacaagtaaaaaagatcatggtttccacatccaaccttctccggataaaccatcaagtagttcggaaacaaacaaaaacgcctcattat 307  Q
    ||||| |||||| ||||||||||||| ||||| |||||| ||||| |||||||| |||||| |||||| | |||||||| ||||||||||||||    
T  22431781 aaagatacaagtgaaaaagatcatggcttccatatccaatcttcttcggataaagcatcaactagttctgcaacaaacagaaacgcctcattat 22431688  T

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Target: chr3; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 22368743 - 22368449
Alignment:
Q  10 aagaaaatcaaagacatgatcaagcagctgatagaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacatcaatcttctg 109  Q
    |||||||||||||||||||  ||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22368743 aagaaaatcaaagacatgacgaagcagctgatagaaacatcttttcacatagaagatgtcattgatgattatatcttccttgaggaacatcaatcttctg 22368644  T
Q  110 atcctggatgtgctgctggtgcaattgacttggtgaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagaga 209  Q
    | |||||||||||||||| ||   |||||||| | |||||||  |  || ||||||||||| ||||| ||||||||||||||||| |||| |||||| ||    
T  22368643 aacctggatgtgctgctgctg---ttgacttgctcaaaactacaaaactacgtctccaaattgcttataagattcagaacatcaattcccaaattaggga 22368547  T
Q  210 aataaaagaaacaagtaaaaaagatcatggtttccacatccaaccttctccggataaaccatcaagtagttcggaaacaaacaaaaacgcctcattat 307  Q
    |||||||||||||||| |||| |||||||  ||| |||||||| |||||  ||||||| ||||||||||||| | |||||||| ||| ||||||||||    
T  22368546 aataaaagaaacaagtgaaaaggatcatgacttcgacatccaatcttctttggataaagcatcaagtagttctgcaacaaacagaaatgcctcattat 22368449  T

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Target: chr3; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 22358839 - 22358539
Alignment:
Q  10 aagaaaatcaaagacatgatcaagcagctgatagaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacatcaatcttctg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||  || |||    
T  22358839 aagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctg 22358740  T
Q  110 atcctggatgtgctgctggtgcaattgacttggtgaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagaga 209  Q
    |||||||||||||||||||||  |   |||  || ||||||| |  | | |||||||||||||||||||||||||||||||||||||||||||| || ||    
T  22358739 atcctggatgtgctgctggtgttacaaactgtgtcaaaactatggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtga 22358640  T
Q  210 aataaaagaaacaag---taaaaaagatcatggtttccacatccaaccttctccggataaaccatcaagtagttcggaaacaaacaaaaacgcctcatta 306  Q
    |||||| || |||||   | ||||||||||||| ||| | |||||| ||||| |||||||| |||||| |||||  | |||||||| |||||||||||||    
T  22358639 aataaatgatacaagaactgaaaaagatcatggcttctatatccaatcttcttcggataaagcatcaactagttatgcaacaaacagaaacgcctcatta 22358540  T
Q  307 t 307  Q
    |    
T  22358539 t 22358539  T

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Target: chr3; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 22636340 - 22636044
Alignment:
Q  10 aagaaaatcaaagacatgatcaagcagctgatagaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacatcaatcttctg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||  || |||    
T  22636340 aagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacattgaagatgtcattgatgattatatctttcttgaggaacaacatgctcctg 22636241  T
Q  110 atcctggatgtgctgctggtgcaattgacttggtgaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagaga 209  Q
    ||||||| |||||||||| ||| |   |||  || ||||||| |  | | |||||||||||||||||||||||||||||||||||||||||||| || ||    
T  22636240 atcctggttgtgctgctgttgctacaaactgtgtcaaaactatggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtga 22636141  T
Q  210 aataaaagaaacaag---taaaaaagatcatggtttccacatccaaccttctccggataaaccatcaagtagttcggaaacaaacaaaaacgcctca 303  Q
    |||||| || |||||   | ||||||||||||| ||| | |||||| ||||  |||||||| |||||| |||||| | |||||||| ||||||||||    
T  22636140 aataaatgatacaagaactgaaaaagatcatggcttctatatccaatcttcatcggataaagcatcaactagttctgcaacaaacagaaacgcctca 22636044  T

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Target: chr3; HSP #8
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 22443572 - 22443276
Alignment:
Q  11 agaaaatcaaagacatgatcaagcagctgatagaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacatcaatcttctga 110  Q
    ||||||||||||  |||||||| ||| |||||||||||||||| || || |||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  22443572 agaaaatcaaagcaatgatcaaacagttgatagaagcatcttttcatatagaagatgtcattgatgattatatcttccttgaagaacatcaatcttctga 22443473  T
Q  111 tcctggatgtgctgctggtgcaattgacttggtgaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagagaa 210  Q
    || ||||||||||||||||    |||||||| | |||||||||||||||||||||||||||||    ||||||||||||||||| || ||||||||||||    
T  22443472 tcttggatgtgctgctggt---cttgacttgatcaaaactaagattcttcgtctccaaatagcagttaagattcagaacatcaattctcgaattagagaa 22443376  T
Q  211 ataa---aagaaacaagtaaaaaagatcatggtttccacatccaaccttctccggataaaccatcaagtagttcggaaacaaacaaaaacgcctcattat 307  Q
    ||||   ||||  ||||| ||||||||||||| ||||| |||| | ||||| | ||||| ||||||||||||||   |||||   |||||||||||||||    
T  22443375 ataaaacaagattcaagtgaaaaagatcatggcttccaaatccgatcttcttccgataagccatcaagtagttctccaacaagtgaaaacgcctcattat 22443276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 35 - 281
Target Start/End: Complemental strand, 22437443 - 22437197
Alignment:
Q  35 agctgatagaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacatcaatcttctgatcctggatgtgctgctggtgcaat 134  Q
    |||| ||||||||||||||  |||| |||||||||||||||||||||||||| | ||||||||| ||| || |||||||||||||||| |||||||| |     
T  22437443 agctaatagaagcatcttttgacatagaagatgtcattgatgattatatcttccatgaggaacaacaagctcctgatcctggatgtgccgctggtgccac 22437344  T
Q  135 tgacttggtgaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagagaaataaaagaaacaagtaaaaaagat 234  Q
      |||  || ||||||| |  ||  |||||||||||||| |||| |||||||||||||||||||||||| || ||||||||||| |||||| ||||||||    
T  22437343 aaactgtgtcaaaactatggctcaccgtctccaaatagcctacacgattcagaacatcaaatcccgaatgagtgaaataaaagatacaagtgaaaaagat 22437244  T
Q  235 catggtttccacatccaaccttctccggataaaccatcaagtagttc 281  Q
    || |  ||||   ||||| ||||| |||||||| |||||||||||||    
T  22437243 caagccttccgtctccaatcttcttcggataaagcatcaagtagttc 22437197  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 22459179 - 22459099
Alignment:
Q  145 aaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagagaaataaaagaaacaagt 225  Q
    |||||||  |||||||||| ||||||||| |||||||||||||| |||||||||| |||||| ||||| || || ||||||    
T  22459179 aaaactataattcttcgtcgccaaatagcatacaagattcagaaaatcaaatcccaaattagtgaaatgaatgatacaagt 22459099  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 22482160 - 22482080
Alignment:
Q  145 aaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagagaaataaaagaaacaagt 225  Q
    |||||||  |||||||||| ||||||||| |||||||||||||| |||||||||| |||||| ||||| || || ||||||    
T  22482160 aaaactataattcttcgtcgccaaatagcatacaagattcagaaaatcaaatcccaaattagtgaaatgaatgatacaagt 22482080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 22631029 - 22630976
Alignment:
Q  254 cttctccggataaaccatcaagtagttcggaaacaaacaaaaacgcctcattat 307  Q
    ||||| |||||||||||||||||||||| | |||||||| |||| |||||||||    
T  22631029 cttcttcggataaaccatcaagtagttctgcaacaaacagaaacacctcattat 22630976  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 22207795 - 22207833
Alignment:
Q  153 gattcttcgtctccaaatagcttacaagattcagaacat 191  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  22207795 gattcttcgtctacaaatagcttacaagattcaggacat 22207833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 22459276 - 22459220
Alignment:
Q  27 gatcaagcagctgatagaagcatctttccacatggaagatgtcattgatgattatat 83  Q
    |||||||||||| ||||||||||||||   |||  |||||||||||||||| |||||    
T  22459276 gatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatat 22459220  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 22482257 - 22482201
Alignment:
Q  27 gatcaagcagctgatagaagcatctttccacatggaagatgtcattgatgattatat 83  Q
    |||||||||||| ||||||||||||||   |||  |||||||||||||||| |||||    
T  22482257 gatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatat 22482201  T

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