View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20410_low_4 (Length: 272)

Name: NF20410_low_4
Description: NF20410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20410_low_4
NF20410_low_4
[»] chr8 (6 HSPs)
chr8 (21-113)||(15931823-15931915)
chr8 (21-113)||(17283765-17283857)
chr8 (59-113)||(26009954-26010008)
chr8 (21-82)||(29296425-29296486)
chr8 (201-249)||(5851902-5851950)
chr8 (201-256)||(26009822-26009877)
[»] scaffold0006 (2 HSPs)
scaffold0006 (21-111)||(198961-199051)
scaffold0006 (201-249)||(199094-199141)
[»] chr7 (16 HSPs)
chr7 (24-113)||(48353834-48353923)
chr7 (21-109)||(16918086-16918174)
chr7 (21-113)||(16921526-16921618)
chr7 (21-113)||(34242715-34242807)
chr7 (205-258)||(16916038-16916091)
chr7 (205-258)||(16917937-16917990)
chr7 (21-113)||(17225506-17225597)
chr7 (21-113)||(9609741-9609832)
chr7 (21-113)||(9837313-9837404)
chr7 (201-256)||(16921670-16921725)
chr7 (201-256)||(48345977-48346032)
chr7 (202-256)||(9609633-9609687)
chr7 (202-256)||(9837205-9837259)
chr7 (50-113)||(4437362-4437426)
chr7 (50-113)||(4444763-4444827)
chr7 (50-113)||(33558206-33558270)
[»] chr6 (9 HSPs)
chr6 (21-113)||(22363783-22363875)
chr6 (21-113)||(21621632-21621724)
chr6 (21-113)||(25918185-25918277)
chr6 (21-113)||(33539796-33539888)
chr6 (204-258)||(22363966-22364020)
chr6 (201-256)||(25649651-25649706)
chr6 (66-113)||(25649771-25649818)
chr6 (50-101)||(32350599-32350650)
chr6 (201-256)||(33539953-33540008)
[»] scaffold0107 (2 HSPs)
scaffold0107 (21-113)||(11935-12027)
scaffold0107 (201-256)||(11826-11881)
[»] chr3 (8 HSPs)
chr3 (21-104)||(34558374-34558457)
chr3 (21-113)||(12020456-12020548)
chr3 (31-113)||(17203171-17203253)
chr3 (201-258)||(17203026-17203083)
chr3 (21-99)||(15549037-15549115)
chr3 (201-258)||(12020311-12020368)
chr3 (201-256)||(34558257-34558312)
chr3 (201-256)||(15548896-15548951)
[»] scaffold0025 (1 HSPs)
scaffold0025 (21-110)||(51837-51926)
[»] chr2 (6 HSPs)
chr2 (21-113)||(40641882-40641974)
chr2 (21-113)||(9782516-9782608)
chr2 (201-256)||(9782672-9782727)
chr2 (201-256)||(19812800-19812855)
chr2 (201-256)||(40642062-40642117)
chr2 (21-63)||(19660893-19660935)
[»] chr1 (4 HSPs)
chr1 (21-113)||(17607444-17607536)
chr1 (21-97)||(17022080-17022156)
chr1 (201-256)||(17021945-17022000)
chr1 (201-256)||(17607313-17607368)
[»] scaffold1311 (1 HSPs)
scaffold1311 (21-111)||(238-328)
[»] chr5 (2 HSPs)
chr5 (24-113)||(21227931-21228020)
chr5 (201-256)||(21228108-21228163)
[»] chr4 (6 HSPs)
chr4 (25-110)||(18275317-18275402)
chr4 (26-107)||(19824036-19824117)
chr4 (21-82)||(42707288-42707349)
chr4 (201-249)||(18275212-18275260)
chr4 (21-78)||(7187516-7187573)
chr4 (50-113)||(38763293-38763357)
[»] scaffold0047 (2 HSPs)
scaffold0047 (23-112)||(1680-1769)
scaffold0047 (201-256)||(1847-1902)
[»] scaffold0010 (1 HSPs)
scaffold0010 (21-113)||(29603-29695)
[»] scaffold0175 (1 HSPs)
scaffold0175 (21-82)||(6762-6823)
[»] scaffold0031 (2 HSPs)
scaffold0031 (25-100)||(98767-98842)
scaffold0031 (217-256)||(98936-98975)
[»] scaffold0028 (1 HSPs)
scaffold0028 (21-69)||(64068-64116)
[»] scaffold0009 (1 HSPs)
scaffold0009 (21-61)||(68051-68091)


Alignment Details
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 15931915 - 15931823
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    |||||||||||||||| ||||||||||  |||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||    
T  15931915 aacggcctagacgttgttgtgcttggtaccacatgcatgtaggtgtcggagttaggcgcattgcataattaacatgagttgatttgttgcatg 15931823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 17283857 - 17283765
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    |||||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||    
T  17283857 aacggcctagacgttgttgtgcttggtaccacatgcatgtaggcgtcggtgttaggcgcattgcataattaacatgagttgatttgttgcatg 17283765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 26010008 - 26009954
Alignment:
Q  59 gtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    ||||| ||| ||||||||||||||  |||||||||||||||||||||||||||||    
T  26010008 gtaggtgtcagagttaggcgcattgcataattaacatgagttgatttgttgcatg 26009954  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 29296486 - 29296425
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcatt 82  Q
    |||||||||||||||| |||| |||||  |||||||||||||| ||| || |||||||||||    
T  29296486 aacggcctagacgttgttgtgattggtaccacatgcatgtaggtgtcagatttaggcgcatt 29296425  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 5851950 - 5851902
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacata 249  Q
    ||||||||||||||  |||||||| || |||||||||||||||||||||    
T  5851950 tggtgaatacttgaccgtattattttggaatgttatgtaaatgtacata 5851902  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 26009877 - 26009822
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    ||||||||||||| | |||||||| || ||||||||||||| ||||||| ||||||    
T  26009877 tggtgaatacttggtcgtattattttggaatgttatgtaaaggtacatattgaatt 26009822  T

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Target: scaffold0006 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 198961 - 199051
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgca 111  Q
    |||||||||||||||| ||||||||||  |||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||    
T  198961 aacggcctagacgttgttgtgcttggtaccacatgcatgtaggtgtcggagttaggcgcattgcataattaacatgagttgatttgttgca 199051  T

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Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 199094 - 199141
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacata 249  Q
    |||||| |||||||| |||||||| || |||||||||||||||||||||    
T  199094 tggtgactacttgatcgtattatt-tggaatgttatgtaaatgtacata 199141  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 48353923 - 48353834
Alignment:
Q  24 ggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    ||||||||||||| ||||||||||  |||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||    
T  48353923 ggcctagacgttgttgtgcttggtaccacatgcatgtaggtgtcggagttaggcgcattgcataattaacatgagttgatttgttgcatg 48353834  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 16918174 - 16918086
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttg 109  Q
    |||||||||||||||| ||||||||||  ||||||||| |||| ||||||||||||||||||  |||||||||||||||||||||||||    
T  16918174 aacggcctagacgttgttgtgcttggtaccacatgcatttaggtgtcggagttaggcgcattgcataattaacatgagttgatttgttg 16918086  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 16921526 - 16921618
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    |||| ||||||| ||| ||||||||||  |||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||    
T  16921526 aacgacctagacattgttgtgcttggtaccacatgcatgtaggtgtcggagttaggcgcattgcataattaacatgagttgatttgttgcatg 16921618  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 34242715 - 34242807
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    |||||||||||||||| ||||||||||  |||||||||||| | |||||||||||| |||||  |||||||||||||||||| ||||||||||    
T  34242715 aacggcctagacgttgttgtgcttggtaccacatgcatgtatgtgtcggagttaggtgcattgcataattaacatgagttgaattgttgcatg 34242807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 16916091 - 16916038
Alignment:
Q  205 gaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaattga 258  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16916091 gaatacttgattgtattattttgaaatgttatgtaaatgtacatactgaattga 16916038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 16917990 - 16917937
Alignment:
Q  205 gaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaattga 258  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16917990 gaatacttgattgtattattttgaaatgttatgtaaatgtacatactgaattga 16917937  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 17225506 - 17225597
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    |||||||||||||||| ||||||||||  |||||||||||||| ||  | ||||||||||||  |||||||||||||||||| ||||||||||    
T  17225506 aacggcctagacgttgttgtgcttggtaccacatgcatgtaggtgttagtgttaggcgcattgcataattaacatgagttga-ttgttgcatg 17225597  T

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Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 9609832 - 9609741
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    ||||| |||||||||| ||||||||||  |||| ||||||| | ||||| ||||||||||||  |||| ||||||||||||||||||||||||    
T  9609832 aacggtctagacgttgttgtgcttggtaccacaagcatgtaagtgtcgg-gttaggcgcattgcataactaacatgagttgatttgttgcatg 9609741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 9837404 - 9837313
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    ||||| |||||||||| ||||||||||  |||| ||||||| | ||||| ||||||||||||  |||| ||||||||||||||||||||||||    
T  9837404 aacggtctagacgttgttgtgcttggtaccacaagcatgtaagtgtcgg-gttaggcgcattgcataactaacatgagttgatttgttgcatg 9837313  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 16921670 - 16921725
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    |||||||| |||||| |||||||| || ||||||||||||||||||||| ||||||    
T  16921670 tggtgaatgcttgatcgtattattttggaatgttatgtaaatgtacatattgaatt 16921725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 48346032 - 48345977
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    ||||||||||||| | |||||||| || ||||||||||||||||||||| ||||||    
T  48346032 tggtgaatacttggtcgtattattttggaatgttatgtaaatgtacatattgaatt 48345977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 9609687 - 9609633
Alignment:
Q  202 ggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    |||||||||||||| |||||||| ||  |||||||||||||||||||| ||||||    
T  9609687 ggtgaatacttgatcgtattattatgggatgttatgtaaatgtacatattgaatt 9609633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 9837259 - 9837205
Alignment:
Q  202 ggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    |||||||||||||| |||||||| ||  |||||||||||||||||||| ||||||    
T  9837259 ggtgaatacttgatcgtattattatgggatgttatgtaaatgtacatattgaatt 9837205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 4437426 - 4437362
Alignment:
Q  50 cacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttg-atttgttgcatg 113  Q
    |||||||||||| | |||||| |||||||||||  ||||||||||||||||| | ||||||||||    
T  4437426 cacatgcatgtatgtgtcggaattaggcgcattgcataattaacatgagttgtaattgttgcatg 4437362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 4444827 - 4444763
Alignment:
Q  50 cacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttg-atttgttgcatg 113  Q
    |||||||||||| | |||||| |||||||||||  ||||||||||||||||| | ||||||||||    
T  4444827 cacatgcatgtatgtgtcggaattaggcgcattgcataattaacatgagttgtaattgttgcatg 4444763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 33558270 - 33558206
Alignment:
Q  50 cacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttg-atttgttgcatg 113  Q
    |||||||||||| | |||||| |||||||||||  |||||||| |||||||| | ||||||||||    
T  33558270 cacatgcatgtatgtgtcggaattaggcgcattgcataattaatatgagttgtaattgttgcatg 33558206  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 22363783 - 22363875
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    |||| ||||||||||| ||||||||||  |||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||    
T  22363783 aacgacctagacgttgttgtgcttggtaccacatgcatgtaggtgtcggagttaggcgcattgcataattaacatgagttgatttgttgcatg 22363875  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 21621724 - 21621632
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    |||||||||||||||| ||| ||||||  |||||||||||||| ||||||||||||||||||  |||||||||||||||||| ||||||||||    
T  21621724 aacggcctagacgttgttgttcttggtaccacatgcatgtaggtgtcggagttaggcgcattgcataattaacatgagttgaattgttgcatg 21621632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 25918277 - 25918185
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    |||||||||||||||| ||||||||||  ||||||||||||||  |||| ||||||||||||  |||||||| ||||||||||||||||||||    
T  25918277 aacggcctagacgttgttgtgcttggtaccacatgcatgtaggtatcggtgttaggcgcattgcataattaatatgagttgatttgttgcatg 25918185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 33539796 - 33539888
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    |||||||||||||||| ||||||||||  |||||||||||| | |||||| |||||||||||  |||||||||||||||||| ||||||||||    
T  33539796 aacggcctagacgttgttgtgcttggtaccacatgcatgtatgtgtcggaattaggcgcattgcataattaacatgagttgaattgttgcatg 33539888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 22363966 - 22364020
Alignment:
Q  204 tgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaattga 258  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  22363966 tgaatacttgattttattattttgaaatgttatgtaaatgtacatactgaattga 22364020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 25649706 - 25649651
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    ||||||||||||||| ||| |||| || ||||||||||||||||||||| ||||||    
T  25649706 tggtgaatacttgatcgtaatattttggaatgttatgtaaatgtacatattgaatt 25649651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 25649818 - 25649771
Alignment:
Q  66 tcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    |||||||||| ||||||  |||||||||||||||||| ||||||||||    
T  25649818 tcggagttagccgcattgcataattaacatgagttgaattgttgcatg 25649771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 32350650 - 32350599
Alignment:
Q  50 cacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttg 101  Q
    |||||||||||| | |||||| |||||||||||  |||||||||||||||||    
T  32350650 cacatgcatgtatgtgtcggaattaggcgcattgcataattaacatgagttg 32350599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 33539953 - 33540008
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    |||| |||||||||| ||| |||| || ||||||||||||||||||||| ||||||    
T  33539953 tggttaatacttgatcgtaatattttggaatgttatgtaaatgtacatattgaatt 33540008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 12027 - 11935
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    |||| ||||||||||| ||||||||||  |||||||||||||| ||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  12027 aacgacctagacgttgttgtgcttggtaccacatgcatgtaggtgtcggagttaggcgcattgcataattgacatgagttgatttgttgcatg 11935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 11881 - 11826
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    ||||||||||||| | |||||||| |  ||||||||||||||||||||| ||||||    
T  11881 tggtgaatacttggtcgtattattttagaatgttatgtaaatgtacatattgaatt 11826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 34558457 - 34558374
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatt 104  Q
    |||||||||||||||| ||||||||||  |||||||||||||| ||||||||||||||||||  ||||||||||||||||||||    
T  34558457 aacggcctagacgttgttgtgcttggtaccacatgcatgtaggtgtcggagttaggcgcattgcataattaacatgagttgatt 34558374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 12020548 - 12020456
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    |||| ||||||||||| ||||||||||  |||||||||||||| |||||||||||| |||||  |||||||| ||||||||||||||||||||    
T  12020548 aacgacctagacgttgttgtgcttggtaccacatgcatgtaggtgtcggagttaggtgcattgcataattaaaatgagttgatttgttgcatg 12020456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 17203253 - 17203171
Alignment:
Q  31 acgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    |||||| ||||||||||  |||||||||||||| ||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  17203253 acgttgttgtgcttggtaccacatgcatgtaggtgtcggagttagacgcattgcataattaacatgagttgatttgttgcatg 17203171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 17203083 - 17203026
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaattga 258  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17203083 tggtgaatacttgattgtattattctgaaatgttatgaaaatgtacatactgaattga 17203026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 15549115 - 15549037
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagt 99  Q
    |||||||||||||||| ||||||||||  |||||||||||||| ||||| ||||||||||||  |||||||||||||||    
T  15549115 aacggcctagacgttgttgtgcttggtaccacatgcatgtaggtgtcggtgttaggcgcattacataattaacatgagt 15549037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 12020368 - 12020311
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaattga 258  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||    
T  12020368 tggtgaatacttgattgtattattttgaaatgttatgtaaatgtacatattgagttga 12020311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 34558312 - 34558257
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |||||| ||||||    
T  34558312 tggtgaatacttggttgtattattttgaaatgttatgtaaatatacatattgaatt 34558257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 15548951 - 15548896
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    |||||||||||||||||||||||  || ||||||||||||||| ||||| ||||||    
T  15548951 tggtgaatacttgattgtattatcttggaatgttatgtaaatgcacatattgaatt 15548896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 51926 - 51837
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgc 110  Q
    |||||||||||| ||| ||||||||||  |||||||||||||| ||||| ||||||||||||  ||||||||||||||||||||||||||    
T  51926 aacggcctagacattgttgtgcttggtatcacatgcatgtaggtgtcggtgttaggcgcattgcataattaacatgagttgatttgttgc 51837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 40641882 - 40641974
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    |||||| ||||||||| |||||||| |  |||||||||||||| ||||| ||||||||||||  |||||||||||||||||||||||||||||    
T  40641882 aacggcgtagacgttgttgtgcttgataccacatgcatgtaggtgtcggtgttaggcgcattgcataattaacatgagttgatttgttgcatg 40641974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 9782516 - 9782608
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    |||||||||||||||| |||| |||||  |||||||||||||  ||||| ||||| ||||||  ||||||||||||||||||| |||||||||    
T  9782516 aacggcctagacgttgttgtgtttggtaccacatgcatgtagttgtcggtgttagacgcattgcataattaacatgagttgatatgttgcatg 9782608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 9782672 - 9782727
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| || ||||||    
T  9782672 tggtgaatacttgattgtattattttgaaatgttatgtaaatgtacgtattgaatt 9782727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 19812800 - 19812855
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    |||||||||||||||||||||||| ||  ||||||||||||| || ||| ||||||    
T  19812800 tggtgaatacttgattgtattattttgttatgttatgtaaatatagatattgaatt 19812855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 40642062 - 40642117
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    |||||||||||||||||||||||  || ||||||| ||||||| ||||| ||||||    
T  40642062 tggtgaatacttgattgtattatcttggaatgttaagtaaatgcacatattgaatt 40642117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 19660935 - 19660893
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtagg 63  Q
    |||||||||||||||| ||||||||||  ||||||||||||||    
T  19660935 aacggcctagacgttgttgtgcttggtaccacatgcatgtagg 19660893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 17607536 - 17607444
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    ||||||||||| |||| ||||||||||  |||||||||||||| ||||||||||||| ||||  ||||||||||||||| |||||||||||||    
T  17607536 aacggcctagatgttgttgtgcttggtaccacatgcatgtaggtgtcggagttaggcacattgcataattaacatgagtagatttgttgcatg 17607444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 17022156 - 17022080
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatga 97  Q
    |||||||||||||||| ||||||| ||  |||||||||||||| ||||| ||||||||||||  |||||| ||||||    
T  17022156 aacggcctagacgttgttgtgctttgtaccacatgcatgtaggtgtcggtgttaggcgcattgcataatttacatga 17022080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 17022000 - 17021945
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    |||||||||||||||||||||||  || ||||||||||||||||||||| ||||||    
T  17022000 tggtgaatacttgattgtattatcttggaatgttatgtaaatgtacatattgaatt 17021945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 17607368 - 17607313
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    ||||||||| ||| |||||||||| || ||||||||||||||||||||| ||||||    
T  17607368 tggtgaatatttggttgtattattttggaatgttatgtaaatgtacatattgaatt 17607313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1311 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1311
Description:

Target: scaffold1311; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 328 - 238
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgca 111  Q
    |||| ||||||||||| ||||||||||  |||||||||||||| ||||| ||||||||||||  |||||||||||||||| ||||||||||    
T  328 aacgacctagacgttgttgtgcttggtaccacatgcatgtaggtgtcggtgttaggcgcattacataattaacatgagttcatttgttgca 238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 21227931 - 21228020
Alignment:
Q  24 ggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    ||||||||||||| ||||||||||  |||||||||||||   || ||||||||||||||  |||||||||||||||||||||||||||||    
T  21227931 ggcctagacgttgttgtgcttggtaccacatgcatgtagatatcagagttaggcgcattgcataattaacatgagttgatttgttgcatg 21228020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 21228108 - 21228163
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||    
T  21228108 tggtgaatatttgattgtattattttgaaatgttatgtaaatgtacatattgaatt 21228163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 18275402 - 18275317
Alignment:
Q  25 gcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgc 110  Q
    |||||||||||| ||||||||||  |||||||||||||  ||| ||||||||||||||  ||||||||||||||||||||||||||    
T  18275402 gcctagacgttgttgtgcttggtaccacatgcatgtagctgtcagagttaggcgcattgcataattaacatgagttgatttgttgc 18275317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 19824036 - 19824117
Alignment:
Q  26 cctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgt 107  Q
    ||||||||||| ||||||||||  ||||| |||||  | ||||| ||||||||||||  |||||||||||||||||| ||||    
T  19824036 cctagacgttgttgtgcttggtaccacatacatgttagtgtcggtgttaggcgcattgcataattaacatgagttgacttgt 19824117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 42707349 - 42707288
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcatt 82  Q
    ||||| |||||||||| ||||||||||  |||||||||||||| |||| | |||||||||||    
T  42707349 aacggactagacgttgttgtgcttggtaccacatgcatgtaggtgtcgtatttaggcgcatt 42707288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 18275260 - 18275212
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacata 249  Q
    ||||||||| ||||| |||||||| || |||||||||||||||||||||    
T  18275260 tggtgaatagttgatcgtattattttggaatgttatgtaaatgtacata 18275212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 7187516 - 7187573
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcg 78  Q
    |||||||||||| ||| ||||||||||  |||||||||||||| || ||| |||||||    
T  7187516 aacggcctagacattgttgtgcttggtaccacatgcatgtaggtgttggaattaggcg 7187573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 38763357 - 38763293
Alignment:
Q  50 cacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttg-atttgttgcatg 113  Q
    ||||||||| || | |||||| |||||||||||  ||||||||||||||||| | ||||||||||    
T  38763357 cacatgcatatatgtgtcggaattaggcgcattgcataattaacatgagttgtaattgttgcatg 38763293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 1680 - 1769
Alignment:
Q  23 cggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcat 112  Q
    |||||||||||||| ||||||||||  |||||||||||||| ||  ||||||||||||||  |||||| |||||||||||| ||||||||    
T  1680 cggcctagacgttgttgtgcttggtaccacatgcatgtaggtgtgagagttaggcgcattgcataattcacatgagttgatctgttgcat 1769  T

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Target: scaffold0047; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 1847 - 1902
Alignment:
Q  201 tggtgaatacttgattgtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    ||||| ||||||||| |||||||| || ||||||||||||||||||||| ||||||    
T  1847 tggtggatacttgatcgtattattttggaatgttatgtaaatgtacatattgaatt 1902  T

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Target: scaffold0010 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 29695 - 29603
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagttgatttgttgcatg 113  Q
    |||||||||||||||| ||| ||||||  |||||||||||||| |  || ||||||||||||  |||||| ||||||||||||||||||||||    
T  29695 aacggcctagacgttgttgttcttggtaccacatgcatgtaggtgctggtgttaggcgcattgcataatttacatgagttgatttgttgcatg 29603  T

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Target: scaffold0175 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 6762 - 6823
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcatt 82  Q
    |||||||||||||||| ||||||||||  |||||||||||||| |||||| |||||||||||    
T  6762 aacggcctagacgttgttgtgcttggtaccacatgcatgtaggtgtcggaattaggcgcatt 6823  T

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Target: scaffold0031 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 98767 - 98842
Alignment:
Q  25 gcctagacgttgctgtgcttggttacacatgcatgtaggcgtcggagttaggcgcattcaataattaacatgagtt 100  Q
    |||||||||||| ||||||||||  |||||||||||| | ||||||||||||| ||||  ||||||| ||||||||    
T  98767 gcctagacgttgttgtgcttggtaccacatgcatgtatgtgtcggagttaggcacattgcataattagcatgagtt 98842  T

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Target: scaffold0031; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 98936 - 98975
Alignment:
Q  217 gtattattctgaaatgttatgtaaatgtacatactgaatt 256  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  98936 gtattattttgaaatgttatgtaaatgtacatattgaatt 98975  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 64068 - 64116
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgtaggcgtcgg 69  Q
    |||||||||||||||| || |||||||  |||||||||||||| |||||    
T  64068 aacggcctagacgttgttgcgcttggtaccacatgcatgtaggtgtcgg 64116  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 68091 - 68051
Alignment:
Q  21 aacggcctagacgttgctgtgcttggttacacatgcatgta 61  Q
    |||||||||||||||| ||||||||||  ||||||||||||    
T  68091 aacggcctagacgttgttgtgcttggtaccacatgcatgta 68051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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