View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20411_high_8 (Length: 312)
Name: NF20411_high_8
Description: NF20411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20411_high_8 |
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| [»] scaffold0045 (3 HSPs) |
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| [»] scaffold0457 (2 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 30 - 312
Target Start/End: Original strand, 25065 - 25346
Alignment:
| Q |
30 |
caccatgctcttcaggttcgattaaactcccatttcattaattttcaacaagttttgcttcaattaactccttgaatctatgaaaatgattattttttgt |
129 |
Q |
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| T |
25065 |
caccatgctcttcaggttcgattaaactcccattccattaattatcaacaagttttgcttcaattaactccttgaatctatgaaaat-attattttttgt |
25163 |
T |
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| Q |
130 |
ttctttaactggtgtttcagggacacccgttagcatgaccttattataattataacacatgtacttaaaatttcagtgtagaagaaagcttgatgacttt |
229 |
Q |
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| T |
25164 |
ttctttaactggtgtttcaggggcacccgttagcatgaccttattataattataacacatgtacttaaaatttcagtgtagaagaaagcttgatgacttt |
25263 |
T |
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| Q |
230 |
ttcgggatggaattagataacagaaagaataaagataaggtggaaacaattgatctaatggatgggttgatgcaaattgaaga |
312 |
Q |
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| T |
25264 |
ttcgggatggaattagataacagaaagaataaagataaggtggaaacaattgatctaatggatgggttgatgcaaattgaaga |
25346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 193 - 312
Target Start/End: Original strand, 39821 - 39943
Alignment:
| Q |
193 |
cttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggaa---acaattgatctaatg |
289 |
Q |
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| T |
39821 |
cttaaaattttagtgtagaagaaagcttgaggacattttttggatggagttaggtaaaagaaagaatgaaaataaggtgaaaagtacaagtgatctaatg |
39920 |
T |
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| Q |
290 |
gatgggttgatgcaaattgaaga |
312 |
Q |
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| T |
39921 |
gatgggttgatgcaaattgaaga |
39943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 191 - 312
Target Start/End: Original strand, 32435 - 32556
Alignment:
| Q |
191 |
tacttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggaaacaattgatctaatgg |
290 |
Q |
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| T |
32435 |
tactcaaaatttcagtgtagaagaaagttggaggacatcttttggatggaattagagaaaagaaaagctgaaaataaggttgaaacaagtgatctaatgg |
32534 |
T |
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| Q |
291 |
atgggttgatgcaaattgaaga |
312 |
Q |
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| T |
32535 |
atgggttgatgcaaattgaaga |
32556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 182 - 312
Target Start/End: Complemental strand, 5008 - 4878
Alignment:
| Q |
182 |
taacacatgtacttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggaaacaattg |
281 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
5008 |
taacacatttaattaaaatttcagtgtagaagaaagcttgatgactttttctggattgaaatagataacagaaaaaataaagataaggtggaaacaattg |
4909 |
T |
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| Q |
282 |
atctaatggatgggttgatgcaaattgaaga |
312 |
Q |
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| T |
4908 |
atctaatggatgggttgatgcaaattgaaga |
4878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 5103 - 5023
Alignment:
| Q |
30 |
caccatgctcttcaggttcgattaaactcccatttcattaattttcaacaagttttgcttcaattaactccttgaatctat |
110 |
Q |
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| T |
5103 |
caccatgctcttcaggttccattaaactcccatttaattaatcatcaacaagttttgcttcaattaactccttgaatctat |
5023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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