View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20411_low_1 (Length: 418)
Name: NF20411_low_1
Description: NF20411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20411_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 409
Target Start/End: Original strand, 42239315 - 42239712
Alignment:
| Q |
20 |
tttcttaatatttgtgttattaacatttcttttgttaggtgtaaatatttgcacacatgatggcagtgcacagtggcggagccattcattggcttggatg |
119 |
Q |
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| T |
42239315 |
tttcttaatatttgtgttattaacatttcttttgttaggtgtaaatatttgcacacatgatggcagtgcacagtggcggagccattcattggcttggatg |
42239414 |
T |
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| Q |
120 |
ggccgtggcccacccaaaccctnnnnnnntcatttctaatttgtaggaacaatcagagtttggaatgaaggaa--------gtttacaccaccttcttca |
211 |
Q |
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| T |
42239415 |
ggccgtggcccacccaaaccct-aaaaaatcatttctaatttgttggaacaatcagagtttggattgaaggaatctaaattgtttacaccaccttcttca |
42239513 |
T |
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| Q |
212 |
tcctaccaaaactactttgttcgcactaaaacatatatgtaccaaacatagacagttagcatgcagtatctcattgatcatttacaacaatagttgagaa |
311 |
Q |
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| T |
42239514 |
tcctaccaaaactactttgttcgcactaaaacatatatgtaccaaacat-----gttagcatgcaatatctcattgatcatttacaacaaaagttgagaa |
42239608 |
T |
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| Q |
312 |
ggaaaacaatttatttcacttact------taatgctctattgcgtgccaattgcaccaattacttgaaaactctcttgtattgtagatgcacacaggtt |
405 |
Q |
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| T |
42239609 |
ggaaaacaatttatttcacttacttgaatataatgctctattgcgcgccaattgcaccaattacttgaacactctcttgtattgtagatgcacacaggtt |
42239708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 17649910 - 17649959
Alignment:
| Q |
18 |
tttttcttaatatttgtgttattaacatttcttttgttaggtgtaaatat |
67 |
Q |
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| T |
17649910 |
ttttttttaatatttgtgttattaacatttattttgttaggtgtaaatat |
17649959 |
T |
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