View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20411_low_5 (Length: 237)

Name: NF20411_low_5
Description: NF20411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20411_low_5
NF20411_low_5
[»] chr5 (5 HSPs)
chr5 (1-221)||(4146490-4146710)
chr5 (114-221)||(4100450-4100557)
chr5 (127-203)||(2326360-2326436)
chr5 (127-183)||(39572373-39572429)
chr5 (132-182)||(39576380-39576430)
[»] chr1 (3 HSPs)
chr1 (57-200)||(5054144-5054287)
chr1 (127-194)||(46672099-46672166)
chr1 (127-194)||(46446001-46446068)
[»] chr8 (3 HSPs)
chr8 (53-167)||(9860659-9860773)
chr8 (127-200)||(27360973-27361046)
chr8 (127-199)||(9841986-9842058)
[»] scaffold0658 (1 HSPs)
scaffold0658 (127-200)||(2851-2924)
[»] chr6 (1 HSPs)
chr6 (127-194)||(112639-112706)
[»] chr3 (1 HSPs)
chr3 (127-194)||(7256841-7256908)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4146710 - 4146490
Alignment:
Q  1 tttccctacttgttacatatgtatttcttcttttcaatagagatgctcgaaggataatttgatggttgatccagaaacaaaacaccacacacagaatatg 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146710 tttccctacttgttacagatgtatttcttcttttcaatagagatactcgaaggataatttgatggttgatccagaaacaaaacaccacacacagaatatg 4146611  T
Q  101 aatctcatggctgcaagcagtcggaaaatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttgaaatgtt 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146610 aatctcatggccgcaagcagtcggaaaatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttgaaatgtt 4146511  T
Q  201 ctacaaaatgcatcattattc 221  Q
    |||||||||||||||||||||    
T  4146510 ctacaaaatgcatcattattc 4146490  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 4100450 - 4100557
Alignment:
Q  114 caagcagtcggaaaatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttgaaatgttctacaaaatgcat 213  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||    
T  4100450 caagcaatcgcaaaatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaatgcat 4100549  T
Q  214 cattattc 221  Q
    ||||||||    
T  4100550 cattattc 4100557  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 2326360 - 2326436
Alignment:
Q  127 aatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttgaaatgttcta 203  Q
    ||||||| |||||||||||||||||||||||| |||||||| | ||||||| |||||  ||||||||||||||||||    
T  2326360 aatcaaatggtcccatctcatgataaagagacaattttcctgaatcaaaattcaaaatgtagatttgaaatgttcta 2326436  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 39572429 - 39572373
Alignment:
Q  127 aatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaa 183  Q
    |||||||||||||||||||||||||| |||||||||||| | | |||||||||||||    
T  39572429 aatcaaaaggtcccatctcatgataaggagaccattttcttgaatcaaaatccaaaa 39572373  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 39576430 - 39576380
Alignment:
Q  132 aaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaa 182  Q
    ||||||||||||||||||||||||||||||| |||| | ||||||||||||    
T  39576430 aaaggtcccatctcatgataaagagaccattctcctgaatcaaaatccaaa 39576380  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 5054144 - 5054287
Alignment:
Q  57 atttgatggttgatccagaaacaaaacaccacacacagaatatgaatctcatggctgcaagcagtcggaaaatcaaaaggtcccatctcatgataaagag 156  Q
    ||||||| ||||||||| |||| ||| |||||| ||| | ||| || |||||| | ||||||||    | |||||||||||||||||||||||||| |||    
T  5054144 atttgatcgttgatccacaaacgaaataccacatacaaagtatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatgataatgag 5054243  T
Q  157 accattttcctaactcaaaatccaaaacatagatttgaaatgtt 200  Q
    ||||||||||    ||||||||||||| |||||| |||||||||    
T  5054244 accattttcccgtatcaaaatccaaaatatagatctgaaatgtt 5054287  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 46672099 - 46672166
Alignment:
Q  127 aatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttga 194  Q
    |||||||| |||||||| ||||||| ||||||||||||||| | |||||||||||||  |||||||||    
T  46672099 aatcaaaatgtcccatcgcatgatagagagaccattttcctgaatcaaaatccaaaatgtagatttga 46672166  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 46446068 - 46446001
Alignment:
Q  127 aatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttga 194  Q
    |||||||| |||||||||||||||||||||||||||  ||  | |||||||||||||  |||||||||    
T  46446068 aatcaaaatgtcccatctcatgataaagagaccattcccccgaatcaaaatccaaaatgtagatttga 46446001  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 9860773 - 9860659
Alignment:
Q  53 gataatttgatggttgatccagaaacaaaacaccacacacagaatatgaatctcatggctgcaagcagtcggaaaatcaaaaggtcccatctcatgataa 152  Q
    ||||||||||||||||||||| |||| |||  ||||| ||| ||| |||| ||| || |  ||||||| |  | ||||||||||||||||||||||||||    
T  9860773 gataatttgatggttgatccacaaacgaaatgccacaaacaaaatctgaagctcttgaccacaagcagacacataatcaaaaggtcccatctcatgataa 9860674  T
Q  153 agagaccattttcct 167  Q
    |||||||||||||||    
T  9860673 agagaccattttcct 9860659  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 27361046 - 27360973
Alignment:
Q  127 aatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttgaaatgtt 200  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||||||||||||  |||||||||| |||||    
T  27361046 aatcaaaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatatgtt 27360973  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 9842058 - 9841986
Alignment:
Q  127 aatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttgaaatgt 199  Q
    |||||||||||||||||||||||| |||||||||||||||| | |||||||||| ||  ||||||||| ||||    
T  9842058 aatcaaaaggtcccatctcatgatgaagagaccattttcctgaatcaaaatccagaatgtagatttgatatgt 9841986  T

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Target: scaffold0658 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 2851 - 2924
Alignment:
Q  127 aatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttgaaatgtt 200  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||||||||||||  |||||||||| |||||    
T  2851 aatcaaaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatatgtt 2924  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 112639 - 112706
Alignment:
Q  127 aatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttga 194  Q
    |||||||||| ||||||||||||||||||| |||||||||||| || ||||||||| |||||||||||    
T  112639 aatcaaaaggccccatctcatgataaagagtccattttcctaaatccaaatccaaagcatagatttga 112706  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 7256908 - 7256841
Alignment:
Q  127 aatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttga 194  Q
    |||||||||||||||||  |||||||||||||||||||| | | |||||||| ||||  |||||||||    
T  7256908 aatcaaaaggtcccatcatatgataaagagaccattttcttgaatcaaaatctaaaatgtagatttga 7256841  T

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