View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20411_low_6 (Length: 231)

Name: NF20411_low_6
Description: NF20411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20411_low_6
NF20411_low_6
[»] chr6 (29 HSPs)
chr6 (13-93)||(30999531-30999611)
chr6 (13-93)||(24889779-24889859)
chr6 (158-217)||(24889655-24889714)
chr6 (13-91)||(29116647-29116725)
chr6 (13-87)||(24731241-24731315)
chr6 (13-87)||(24886105-24886179)
chr6 (13-91)||(29099729-29099807)
chr6 (13-74)||(29074149-29074210)
chr6 (13-74)||(29078913-29078974)
chr6 (13-74)||(29106722-29106783)
chr6 (165-217)||(30999407-30999459)
chr6 (13-88)||(28926085-28926160)
chr6 (13-91)||(29867035-29867113)
chr6 (13-91)||(29929659-29929737)
chr6 (13-73)||(29348151-29348211)
chr6 (13-91)||(24263287-24263365)
chr6 (13-54)||(29882821-29882862)
chr6 (13-54)||(29903623-29903664)
chr6 (13-54)||(29909977-29910018)
chr6 (13-54)||(29912358-29912399)
chr6 (13-54)||(29914378-29914419)
chr6 (13-89)||(29365958-29366034)
chr6 (14-90)||(29887684-29887760)
chr6 (13-63)||(29930454-29930504)
chr6 (13-54)||(29357551-29357592)
chr6 (15-91)||(29085406-29085482)
chr6 (13-89)||(29898459-29898535)
chr6 (26-73)||(30029747-30029794)
chr6 (13-91)||(29894939-29895014)
[»] scaffold0573 (1 HSPs)
scaffold0573 (13-88)||(4523-4598)
[»] scaffold0237 (1 HSPs)
scaffold0237 (13-54)||(22729-22770)
[»] scaffold0054 (1 HSPs)
scaffold0054 (13-73)||(53192-53252)
[»] chr2 (1 HSPs)
chr2 (13-69)||(15062433-15062489)
[»] scaffold0019 (1 HSPs)
scaffold0019 (13-69)||(125680-125736)
[»] scaffold0572 (1 HSPs)
scaffold0572 (28-73)||(3634-3679)
[»] scaffold0429 (1 HSPs)
scaffold0429 (28-73)||(6597-6642)
[»] scaffold0308 (2 HSPs)
scaffold0308 (28-73)||(234-279)
scaffold0308 (28-69)||(9396-9437)
[»] scaffold0014 (1 HSPs)
scaffold0014 (32-69)||(140665-140702)
[»] chr1 (2 HSPs)
chr1 (20-57)||(17251706-17251743)
chr1 (13-73)||(10130523-10130583)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 30999611 - 30999531
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaatttgaaactaggtaagagg 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30999611 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaaattgaaactaggtaagagg 30999531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 24889859 - 24889779
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaatttgaaactaggtaagagg 93  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  24889859 agatgaaaatgacacggcagagaaacttcttcgtgaaatgattgtgagagggctactgtaaaattaaaactaggtaagagg 24889779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 24889714 - 24889655
Alignment:
Q  158 gtacgtccctcacctaacaggcagaagactttattattgctgtttcatttgttaaatgtg 217  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24889714 gtacctccctcacctaacaggcagaagactttattattgctgtttcatttgttaaatgtg 24889655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 29116647 - 29116725
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaatttgaaactaggtaaga 91  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||  |||||||| ||||||    
T  29116647 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcgcgagaggtctactgtaaaactgaaactatgtaaga 29116725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 24731241 - 24731315
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaatttgaaactaggt 87  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||   |||||||||||    
T  24731241 agatgaaaatgatatggcagagaaacttcttcgtgaaatgattgcaagaggtctactgtaagactgaaactaggt 24731315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 24886179 - 24886105
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaatttgaaactaggt 87  Q
    |||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||  |||||||||||    
T  24886179 agatgaaaatgatatggcagagaaacttctccgtgaaatgatcgcgagaggtctactgtaaaactgaaactaggt 24886105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 29099729 - 29099807
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaatttgaaactaggtaaga 91  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| |||||  |||||||| ||||||    
T  29099729 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcgcgagaggtctaccgtaaaactgaaactatgtaaga 29099807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 29074149 - 29074210
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaa 74  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  29074149 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcgcgagaggtctactgtaaa 29074210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 29078913 - 29078974
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaa 74  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  29078913 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcgcgagaggtctactgtaaa 29078974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 29106722 - 29106783
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaa 74  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  29106722 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcgcgagaggtctactgtaaa 29106783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 30999459 - 30999407
Alignment:
Q  165 cctcacctaacaggcagaagactttattattgctgtttcatttgttaaatgtg 217  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30999459 cctcacctaacaggcagaagactttattattgctgtttcatgtgttaaatgtg 30999407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 28926160 - 28926085
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaatttgaaactaggta 88  Q
    |||||||||||| | ||| ||||||||||||| |||||||||| ||||||||||| |||||  |||||||||||||    
T  28926160 agatgaaaatgataaggcggagaaacttcttcttgaaatgattacgagagggctattgtaagattgaaactaggta 28926085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 29867035 - 29867113
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaatttgaaactaggtaaga 91  Q
    |||||||||||| | ||| |||||||||||||||||||||||| ||||||| ||| |||||   |||||||||||||||    
T  29867035 agatgaaaatgataaggcggagaaacttcttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaaga 29867113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 29929659 - 29929737
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaatttgaaactaggtaaga 91  Q
    |||| ||||||| | |||||||||||||||||||||||||||| ||||||| ||| |||||   |||||||||||||||    
T  29929659 agataaaaatgataaggcagagaaacttcttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaaga 29929737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 29348211 - 29348151
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaa 73  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||| |||||    
T  29348211 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcgcgcgaggtctattgtaa 29348151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 24263365 - 24263287
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaatttgaaactaggtaaga 91  Q
    |||||||||||| | ||| |||||||||||||||||||||||| | ||||| ||| |||||   |||||||||||||||    
T  24263365 agatgaaaatgataaggcggagaaacttcttcgtgaaatgattacaagaggtctattgtaagactgaaactaggtaaga 24263287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 29882821 - 29882862
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgat 54  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  29882821 agatgaaaatgatatggcagagaaacttcttcgtgaaatgat 29882862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 29903623 - 29903664
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgat 54  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  29903623 agatgaaaatgatatggcagagaaacttcttcgtgaaatgat 29903664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 29909977 - 29910018
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgat 54  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  29909977 agatgaaaatgatatggcagagaaacttcttcgtgaaatgat 29910018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 29912358 - 29912399
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgat 54  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  29912358 agatgaaaatgatatggcagagaaacttcttcgtgaaatgat 29912399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 29914378 - 29914419
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgat 54  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  29914378 agatgaaaatgatatggcagagaaacttcttcgtgaaatgat 29914419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 29366034 - 29365958
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaatttgaaactaggtaa 89  Q
    |||||||||||| | ||| |||||||||||||||||||||||| ||||||| ||| | |||   |||||||||||||    
T  29366034 agatgaaaatgataaggcggagaaacttcttcgtgaaatgattacgagaggcctattttaagactgaaactaggtaa 29365958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 29887684 - 29887760
Alignment:
Q  14 gatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaatttgaaactaggtaag 90  Q
    ||||||||||| | ||| ||||| |||||||||||||||||| ||||||| ||| |||||   ||||||||||||||    
T  29887684 gatgaaaatgataaggcggagaatcttcttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaag 29887760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 29930454 - 29930504
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagg 63  Q
    |||||||||||| |||||||||||| |||||||||||||||| | ||||||    
T  29930454 agatgaaaatgatatggcagagaaatttcttcgtgaaatgatcgtgagagg 29930504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 29357592 - 29357551
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgat 54  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  29357592 agatgaaaatgagatggcagagaaacttctttgtgaaatgat 29357551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 29085406 - 29085482
Alignment:
Q  15 atgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaatttgaaactaggtaaga 91  Q
    |||||||||| | ||| ||||||||| |||||||||||||| ||||||| ||| |||||   ||||| |||||||||    
T  29085406 atgaaaatgataaggcggagaaactttttcgtgaaatgattacgagaggtctattgtaagactgaaattaggtaaga 29085482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 29898459 - 29898535
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaatttgaaactaggtaa 89  Q
    |||||||||||| | ||| ||||||||||||||||||||||||  |||||| ||| | |||   |||||||||||||    
T  29898459 agatgaaaatgataaggcggagaaacttcttcgtgaaatgattatgagaggcctattataagactgaaactaggtaa 29898535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 30029747 - 30029794
Alignment:
Q  26 atggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaa 73  Q
    |||||||||||||||||| ||||||||||||| ||||| ||| |||||    
T  30029747 atggcagagaaacttctttgtgaaatgattgctagaggtctattgtaa 30029794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 29894939 - 29895014
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaatttgaaactaggtaaga 91  Q
    |||||||||||| | ||| ||||||||||   ||||||||||| ||||||| ||| |||||   |||||||||||||||    
T  29894939 agatgaaaatgataaggcggagaaacttc---gtgaaatgattacgagaggcctattgtaagactgaaactaggtaaga 29895014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 4523 - 4598
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaaatttgaaactaggta 88  Q
    |||||||||||| | ||| ||||||||||||| |||||||||| ||||||||||| |||||  |||||||||||||    
T  4523 agatgaaaatgataaggcggagaaacttcttcttgaaatgattacgagagggctattgtaagattgaaactaggta 4598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 22729 - 22770
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgat 54  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  22729 agatgaaaatgatatggcagagaaacttcttcgtgaaatgat 22770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 53252 - 53192
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaa 73  Q
    |||||||||||| |||||||||||||||||| |||||||||| ||| |||| ||| |||||    
T  53252 agatgaaaatgatatggcagagaaacttctttgtgaaatgatcgcgtgaggtctattgtaa 53192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 15062489 - 15062433
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctact 69  Q
    |||||||||||| |  |||||||||||||||||||||||||| |||||||| |||||    
T  15062489 agatgaaaatgataaagcagagaaacttcttcgtgaaatgatagcgagaggtctact 15062433  T

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Target: scaffold0019 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 125736 - 125680
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctact 69  Q
    |||||| ||||| | ||| |||||||||||||||||||||||||| ||||| |||||    
T  125736 agatgagaatgaaaaggcggagaaacttcttcgtgaaatgattgctagaggtctact 125680  T

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Target: scaffold0572 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 3634 - 3679
Alignment:
Q  28 ggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaa 73  Q
    |||||||||||| || |||||||||||||| ||||| |||||||||    
T  3634 ggcagagaaactactacgtgaaatgattgccagaggtctactgtaa 3679  T

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Target: scaffold0429 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 6597 - 6642
Alignment:
Q  28 ggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaa 73  Q
    |||||||||||| || |||||||||||||| ||||| |||||||||    
T  6597 ggcagagaaactactacgtgaaatgattgctagaggtctactgtaa 6642  T

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Target: scaffold0308 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 234 - 279
Alignment:
Q  28 ggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaa 73  Q
    |||||||||||| || |||||||||||||| ||||| |||||||||    
T  234 ggcagagaaactactacgtgaaatgattgccagaggtctactgtaa 279  T

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Target: scaffold0308; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 9396 - 9437
Alignment:
Q  28 ggcagagaaacttcttcgtgaaatgattgcgagagggctact 69  Q
    ||||||||||||||| |||||||||||||| ||||| |||||    
T  9396 ggcagagaaacttctacgtgaaatgattgctagaggtctact 9437  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 140665 - 140702
Alignment:
Q  32 gagaaacttcttcgtgaaatgattgcgagagggctact 69  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  140665 gagaaacttcttcgtgaaatgattgctagaggtctact 140702  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 17251706 - 17251743
Alignment:
Q  20 aatgacatggcagagaaacttcttcgtgaaatgattgc 57  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  17251706 aatgacaaggctgagaaacttcttcgtgaaatgattgc 17251743  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 10130523 - 10130583
Alignment:
Q  13 agatgaaaatgacatggcagagaaacttcttcgtgaaatgattgcgagagggctactgtaa 73  Q
    |||||||||||| ||||| || |||||||||||||| ||||||  |||||| ||| |||||    
T  10130523 agatgaaaatgatatggcggaaaaacttcttcgtgagatgattaggagaggcctattgtaa 10130583  T

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