View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20412_high_1 (Length: 619)
Name: NF20412_high_1
Description: NF20412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20412_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 23 - 346
Target Start/End: Complemental strand, 42250219 - 42249884
Alignment:
| Q |
23 |
acatcatcatcattatcatccaaatccatcttcattcttgttcagcttcatcgtccctatctgcatattccttcgcattttccttcacctttgcgtgtgt |
122 |
Q |
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| T |
42250219 |
acatcatcatcattatcatccaaatccatcttcattcttgttcagcttcatcgtccctatctgcatattccttcgcattttccttcacctttgcgtgtgt |
42250120 |
T |
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| Q |
123 |
atgtatgtattcatcttcaatcacacatacataaatacatacatacacgcataatctttcaacccttcttatatatcttccttcgcattt---------- |
212 |
Q |
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| T |
42250119 |
atgtatgtattcatcttcaatcacacatacataaatacatacatacacgcataatctttcaacccttcttatatatctttctccgcattttttttgttga |
42250020 |
T |
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| Q |
213 |
-tccttcac-ctttgcgtttcgattcaattcaatttttgataatcatgaacggtttagtcaacaacggtaacggtggcgtcaaagctgttcttcataagg |
310 |
Q |
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| T |
42250019 |
atccttagctatttgcgtttcgattcaattcaatttttgataatcatgaacggtttagtcaacaacggtaacggtggcgtcaaagctgttcttgataagg |
42249920 |
T |
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| Q |
311 |
cggagaagcttattattgatactgaccctgggatcg |
346 |
Q |
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| T |
42249919 |
cggagaagcttattattgatactgaccctgggatcg |
42249884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 429 - 586
Target Start/End: Complemental strand, 42249801 - 42249644
Alignment:
| Q |
429 |
aggtcattaataaaaatttgttaggagtttcttaattcttattatatcatcatgtggttggattcaatattattaagcgtggcggaatttgaacaaatca |
528 |
Q |
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| T |
42249801 |
aggtcattaataaaaatttgttaggagtttcttaattcttattatatcatcatgtggttggattcaatattattaagcgtggcggaatttgaacaaatca |
42249702 |
T |
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| Q |
529 |
ttgttttccgagatgggtgattgacaagactggttgaaatataattttactttgtgta |
586 |
Q |
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| T |
42249701 |
ttgttttccgagatgggtgattgacaagactggttgaaatataattttactttgtgta |
42249644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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