View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20412_high_4 (Length: 358)
Name: NF20412_high_4
Description: NF20412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20412_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 17179785 - 17179868
Alignment:
| Q |
185 |
ttactccatgtctagtctatactttaatgaattgtgctgaactttttaaaatcatttttgttagacacgagcttagttaaatta |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17179785 |
ttactccatgtctagtctatactttaatgaattgtgctgaactttttaaaatcatttttgttacacacgagcttagttaaatta |
17179868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 270 - 358
Target Start/End: Original strand, 17179970 - 17180058
Alignment:
| Q |
270 |
acgagaaggatttaattcactaataagtattttcaactaaacactgtgtattgatacattctctccgtaccgagaattatctacccacc |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
17179970 |
acgagaaggatttaattcactaataagtattttcaactaaacactgtgtattgatacattctctccgtaccgattattatttacccacc |
17180058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 17179671 - 17179748
Alignment:
| Q |
106 |
ggaggtttcttttcccacaaaaatggttggcgtaggtgacgtccacaaagaccagacacatgcacatgtttattgtat |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17179671 |
ggaggtttcttttcccacaaaaatggttggtgtaggtgacgtccacaaagaccagacacatgcacatgtttattgtat |
17179748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 97 - 180
Target Start/End: Original strand, 17184670 - 17184753
Alignment:
| Q |
97 |
ggaggttggggaggtttcttttcccacaaaaatggttggcgtaggtgacgtccacaaagaccagacacatgcacatgtttattg |
180 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| ||||||||||||| |||| |||| |||||||||| || ||||||||| |
|
|
| T |
17184670 |
ggaggatggggaggtttcatttcccacaaaaatggtgggcgtaggtgacgaccacgaagatcagacacatgaacttgtttattg |
17184753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 17169709 - 17169769
Alignment:
| Q |
72 |
caatagtgaaaattggagaacttaaggaggttggggaggtttcttttcccacaaaaatggt |
132 |
Q |
| |
|
||||||||||||| ||| |||| ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
17169709 |
caatagtgaaaataggattacttggggatgctggggaggtttcttttcccacaaaaatggt |
17169769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 17174515 - 17174577
Alignment:
| Q |
70 |
ttcaatagtgaaaattggagaacttaaggaggttggggaggtttcttttcccacaaaaatggt |
132 |
Q |
| |
|
||||||||||||||||| |||| ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
17174515 |
ttcaatagtgaaaattgatttacttggggatgctggggaggtttcttttcccacaaaaatggt |
17174577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 17188359 - 17188391
Alignment:
| Q |
270 |
acgagaaggatttaattcactaataagtatttt |
302 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
17188359 |
acgagaaggattttattcactaataagtatttt |
17188391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University