View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20412_high_5 (Length: 347)
Name: NF20412_high_5
Description: NF20412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20412_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 7459247 - 7459098
Alignment:
| Q |
1 |
acaaaaggcgacaatagaatcaatttcaaaatagttaaaaatcaagaaagatgaaccaacatccatcaagaaatattccaaaaggattcgccacctacct |
100 |
Q |
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| T |
7459247 |
acaaaaggcgacaatagaatcaatttcaaaatagttaaaaatcaagaaagatgaaccaacatccatcaagaaatattccaaaaggattcgccacctacct |
7459148 |
T |
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| Q |
101 |
tgtccattgcatcctcgagctctgccttctcggatggcaaagaggatttt |
150 |
Q |
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| T |
7459147 |
tgtccattgcatcctcgagctctgccttctcggatggcaaagaggatttt |
7459098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 199 - 336
Target Start/End: Complemental strand, 7450478 - 7450341
Alignment:
| Q |
199 |
actcgacctgagagagcctacctcacactcgatgtcggaatcttctccacctccccgatgtctttccttacaacctcaacctcaacaaccttctaagaaa |
298 |
Q |
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| T |
7450478 |
actcaacctgagagagcctacctcacactcgatgtcggaatctgctccacctccccaatgtctttccttacaacctcagcctcaacaatgttctaagaaa |
7450379 |
T |
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| Q |
299 |
tgtcattttcaatttccttgacccacatcgctaaggat |
336 |
Q |
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| T |
7450378 |
tgtcattttcaatttccttgacccacatctctaaggat |
7450341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 199 - 336
Target Start/End: Complemental strand, 7458620 - 7458483
Alignment:
| Q |
199 |
actcgacctgagagagcctacctcacactcgatgtcggaatcttctccacctccccgatgtctttccttacaacctcaacctcaacaaccttctaagaaa |
298 |
Q |
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| T |
7458620 |
actcaacctgagagagcctacctcacactcgatgtcggaatctgctccacctccccaatgtctttccttacaacctcagcctcaacaatgttctaagaaa |
7458521 |
T |
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| Q |
299 |
tgtcattttcaatttccttgacccacatcgctaaggat |
336 |
Q |
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| T |
7458520 |
tgtcattttcaatttccttgacccacatctctaaggat |
7458483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 175
Target Start/End: Complemental strand, 7450543 - 7450513
Alignment:
| Q |
145 |
gattttcccatttcgaggccaaccttcaagg |
175 |
Q |
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| T |
7450543 |
gattttcccatttcgaggccaaccttcaagg |
7450513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 175
Target Start/End: Complemental strand, 7458685 - 7458655
Alignment:
| Q |
145 |
gattttcccatttcgaggccaaccttcaagg |
175 |
Q |
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| T |
7458685 |
gattttcccatttcgaggccaaccttcaagg |
7458655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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