View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20412_high_7 (Length: 344)
Name: NF20412_high_7
Description: NF20412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20412_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 31949916 - 31949609
Alignment:
| Q |
8 |
aagcaaaggaccccacataatcaacagtgctaattctttcagaaaagctgctcaaatcgataagacggaccattttcgccaatgcctatagatggaggca |
107 |
Q |
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| T |
31949916 |
aagcaaaggaccccacataatcaacactgctaattctttcagaaaagctgctcaaatcgataagacggaccattttcaccaatgcctatagatggaggca |
31949817 |
T |
|
| Q |
108 |
attttgtcttcaacaccaacattggaggtgcacatagatacacaaccttattgctatctgctcccgtgaaaccaagtttgatctttattcccgccatcaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
31949816 |
attttgtcttcaacaccaacattggaggtgcacatagatacacaaccttattgctatctgctcccgtgacaccaagtttgatctttattcctgccatcaa |
31949717 |
T |
|
| Q |
208 |
cttacgggcgttg--cacagaggtggccgctcaccagaaaatacacaagacaaatcttgatcatgacagaaatccataaccaatttccaaatagcttctg |
305 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31949716 |
cttacgggcgttgcacacagaggtggccactcaccagaaaatacacaagacaaatcttgatcatgacagaaatccataaccaatttccaaatagcttctg |
31949617 |
T |
|
| Q |
306 |
attgtaat |
313 |
Q |
| |
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|||||||| |
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| T |
31949616 |
attgtaat |
31949609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 29707501 - 29707581
Alignment:
| Q |
61 |
aaatcgataagacggaccattttcgccaatgcctatagatggaggcaattttgtcttcaacaccaacattggaggtgcaca |
141 |
Q |
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| T |
29707501 |
aaattgataagatggaccatttcctccagtgcttgcagatggaggcatttttgttctcagcaccaacattggaggcgcaca |
29707581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 37 - 258
Target Start/End: Original strand, 27510027 - 27510248
Alignment:
| Q |
37 |
ctaattctttcagaaaagctgctcaaatcgataagacggaccattttcgccaatgcctatagatggaggcaattttgtcttcaacaccaacattggaggt |
136 |
Q |
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||||||||| |||||| ||||| |||| ||||||| ||||||||||| ||||||| | ||||||||||| |||||| ||| ||||||||||||||| |
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| T |
27510027 |
ctaattcttccagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattggaggc |
27510126 |
T |
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| Q |
137 |
gcacatagatacacaaccttattgctatctgctcccgtgaaaccaagtttgatctttattcccgccatcaacttacgggcgttgcacagaggtggccgct |
236 |
Q |
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| T |
27510127 |
gcacaaagatagacaaccctattgttagctgctcccgtgacacctaatttgatctttgctccttcaatcaacttacgcgcgctgcacaatgcttgccatt |
27510226 |
T |
|
| Q |
237 |
caccagaaaatacacaagacaa |
258 |
Q |
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|||||||||| ||||| ||||| |
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| T |
27510227 |
caccagaaaaaacacatgacaa |
27510248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 27271379 - 27271262
Alignment:
| Q |
37 |
ctaattctttcagaaaagctgctcaaatcgataagacggaccattttcgccaatgcctatagatggaggcaattttgtcttcaacaccaacattggaggt |
136 |
Q |
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||||||||| |||||| |||| |||| ||||||| ||||||||| | ||| ||| | |||||||||| |||||| ||||||||||||||||||| |
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| T |
27271379 |
ctaattcttccagaaatagtgcttaaattgataagatggaccatttcctccagtgcttgctgatggaggcatttttgttctcaacaccaacattggaggc |
27271280 |
T |
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| Q |
137 |
gcacatagatacacaacc |
154 |
Q |
| |
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||||| |||| |||||| |
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| T |
27271279 |
gcacaatgatagacaacc |
27271262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 295
Target Start/End: Complemental strand, 39210906 - 39210648
Alignment:
| Q |
37 |
ctaattctttcagaaaagctgctcaaatcgataagacggaccattttcgccaatgcctatagatggaggcaattttgtcttcaacaccaacattggaggt |
136 |
Q |
| |
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||||||||| |||||| ||||| |||| ||||||| ||||||||||| ||||||| | ||||||||||| |||||| ||| ||||||||||||||| |
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| T |
39210906 |
ctaattcttccagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattggaggc |
39210807 |
T |
|
| Q |
137 |
gcacatagatacacaaccttattgctatctgctcccgtgaaaccaagtttgatctttattcccgccatcaacttacgggcgttgcacagaggtggccgct |
236 |
Q |
| |
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||||| ||||| |||||| ||||| || ||||||| |||| ||| | |||||||||| ||| | ||||||||| | ||| |||||| | | ||| | |
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| T |
39210806 |
gcacaaagatagacaaccctattgttagctgctcctgtgacacctaatttgatctttgctccttcaatcaacttatgcgcgctgcacaatgcttgccatt |
39210707 |
T |
|
| Q |
237 |
caccagaaaatacacaagacaaatcttgatcatgacagaaatccataaccaatttccaa |
295 |
Q |
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|||||||||| ||||| ||||| || ||||||||| |||||| ||| ||| |||||| |
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| T |
39210706 |
caccagaaaaaacacatgacaaccgttcatcatgacaaaaatccgtaaacaacttccaa |
39210648 |
T |
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