View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20412_low_2 (Length: 251)
Name: NF20412_low_2
Description: NF20412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20412_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 20140893 - 20141115
Alignment:
| Q |
20 |
aaaatcatacagacaaggagagaacatagtcgccagagttacagtttgctggttaccctcgatatctattgaaccaccatcaactgcttcagttcccaga |
119 |
Q |
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| T |
20140893 |
aaaatcatacagacaaggagagaacatagtcgccggagttacagtttgctggttaccctcgatatctattgaaccaccatcaactgcttcagttcccaga |
20140992 |
T |
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| Q |
120 |
tttagaggccattgctcggcatctttatcctcaaaagcgc---aagattcattattttttcttccagaaaacttgattaaatcagctacttggccatttt |
216 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20140993 |
tttagaggccattgctcagcatctttatcctcaaaagcgcaagaagattcattattttttcttccagaagacttgattaaatcagctacttggccatttt |
20141092 |
T |
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| Q |
217 |
cagaggcctttctctgtgctcct |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
20141093 |
cagaggcctttctctgtgctcct |
20141115 |
T |
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