View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20412_low_3 (Length: 248)
Name: NF20412_low_3
Description: NF20412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20412_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 11652214 - 11652428
Alignment:
| Q |
16 |
agagacagctagtttcttcggctagactcatctcgggtatgttccctataggatttgaccaaagaaagggatttagtttaaggttgaatatgttattact |
115 |
Q |
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| T |
11652214 |
agagacagctagtttcttcggctaaactcatctcgaatatgttccctataggatttgatcaaagaaagggatttagtttaaggttgaatatgttattact |
11652313 |
T |
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| Q |
116 |
ccttgtaaaaatgggatcttctaagtttagtcctattnnnnnnnnggtattttaatcattcaaattatattcatttcttaagcatagtagttctccaaat |
215 |
Q |
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| T |
11652314 |
ccttgtaaaaatgggatcttctaagtttaatcctattaaaaaaaaggtattttaatcattcaaattatattcatttcttaggcatagtagttctccaaat |
11652413 |
T |
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| Q |
216 |
aaggatcaatgttac |
230 |
Q |
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| T |
11652414 |
aaggatcaatgttac |
11652428 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 21109760 - 21109708
Alignment:
| Q |
97 |
ggttgaatatgttattactccttgtaaaaatgggatcttctaagtttagtcct |
149 |
Q |
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| T |
21109760 |
ggttaaatatgtttttagtccttgtaaaattgggaccttttaagtttagtcct |
21109708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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