View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20413_high_4 (Length: 452)
Name: NF20413_high_4
Description: NF20413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20413_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 8 - 435
Target Start/End: Complemental strand, 26235241 - 26234814
Alignment:
| Q |
8 |
cgaagaatatatagcacccaaaagcactatacagaccataacaagtaccgatcactgtccacgggcatgcaataaggagaccaaatgataatgcaagcat |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26235241 |
cgaaaaatatatagcacccaaaagcactatacagaccataacaagtaccgatcactgtccacgggcatgcaataaggagaccaaatgataatgcaagcat |
26235142 |
T |
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| Q |
108 |
atacaaagaagtagtaaatgttcttttcatgattgatatgtcattggagttttgaaacatgtgtttgatactcatgagactcgtgtcgttgtgattctct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26235141 |
atacaaagaagtagtaaatgttcttttcatgattgatatgtcattggagttttgaaacatgtgtttgatactcatgagactcgtgtcgttgtgattctct |
26235042 |
T |
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| Q |
208 |
tctgaactcaattttgaggccaaaccaatagttattacagcagaaaagaattcaagaacatgaagagggacagtgtaaatgaatccaagttgaaccaaaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26235041 |
tctgaactcaattttgaggccaaaccaatagttattacagcagaaaagaattcaagaacatgaagagggacagtgtaaatgaatccaagttgaatcaaaa |
26234942 |
T |
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| Q |
308 |
gaggtaaataatcatttacaaaacttggctcaccaatgtaagataatgtgtcatttccaaacatataaattttttcaaacagaggtaaagatgagatgat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26234941 |
gaggtaaataatcatttacaaaacttggctcaccaatgtatgataatgtgtcatttccaaacatataaattttttcaaacagaggtaaagatgagatgat |
26234842 |
T |
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| Q |
408 |
ttgtggagatagaagtagggtttgttgg |
435 |
Q |
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| T |
26234841 |
ttgtggagatagaagtagggtttgttgg |
26234814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 17845250 - 17845190
Alignment:
| Q |
247 |
gcagaaaagaattcaagaacatgaagagggacagtgtaaatgaatccaagttgaaccaaaa |
307 |
Q |
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| T |
17845250 |
gcagaacagaattctagaacatgaagagggacaacgtaaatgaatccaagttgaaccaaaa |
17845190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 37672850 - 37672742
Alignment:
| Q |
74 |
atgcaataaggagaccaaatgataatgcaagcatatacaaagaagtagtaaatgttcttttcatgattgatatgtcattggagttttgaaacatgtgttt |
173 |
Q |
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|||||||||| |||| | |||||||||||| ||||||||||||| ||||||||| ||||||| |||| | ||| | || ||||||||||||||||| |
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| T |
37672850 |
atgcaataagaagacaatttgataatgcaagtgtatacaaagaagtgataaatgttcctttcatggttgacacatcaattgaattttgaaacatgtgttt |
37672751 |
T |
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| Q |
174 |
gatactcat |
182 |
Q |
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| T |
37672750 |
gagactcat |
37672742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 37672681 - 37672617
Alignment:
| Q |
249 |
agaaaagaattcaagaacatgaagagggacagtgtaaatgaatccaagttgaaccaaaagaggta |
313 |
Q |
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|||| ||||||| || | ||||||||||| ||||||||| ||||||||||||| ||||||||||| |
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| T |
37672681 |
agaacagaattctaggaaatgaagagggatagtgtaaataaatccaagttgaatcaaaagaggta |
37672617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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