View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20413_low_3 (Length: 542)
Name: NF20413_low_3
Description: NF20413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20413_low_3 |
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| [»] scaffold0202 (2 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 38 - 325
Target Start/End: Complemental strand, 31093449 - 31093162
Alignment:
| Q |
38 |
ttctccctaaaagcagaatttcttctccaaattcatcaaaaggcacgccgatcatatcaccaaaactccaacactttcaaaacattgtattacctgactc |
137 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31093449 |
ttctccctaaaagctgaatttcttctccaaattcatcaaaaggcacgccaatcatatcaccacaactccaacactttcaaaacattgtattacctgacga |
31093350 |
T |
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| Q |
138 |
ccactttagaagtaatgattgtaaccatccctgaaattagaacaagttcctaaacaagctagagggttagtccactaatgtgatattgcatatccatatc |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31093349 |
ccactttagaagtaatgattgtaaccatccctgaaattagaacaagttcctaaacaagctagagggttagtccactaatgtgatattgcatatccatatc |
31093250 |
T |
|
| Q |
238 |
gcaatgattttgatctcatccagttccgggaaagcattttaaccagttctgaaataggtgacaccgaaattagaacaagttcataagc |
325 |
Q |
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| T |
31093249 |
ccaatgattttgatctcatccagttccgggaaagcattttaaccagttctgaaataggtgacaccgaaattagaacaagttcataagc |
31093162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 401 - 524
Target Start/End: Complemental strand, 31093086 - 31092963
Alignment:
| Q |
401 |
cttgtttaaaaatttcttatatacttataaactcccaataagactatttcttctcatttaataaaaacttgcttatatctgatgggtgcaacaattatga |
500 |
Q |
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| T |
31093086 |
cttgtttaaaaatttcttatatacttataaactcccaataagactatttcttctcatttaataaaaacttgcttatatctgatgggtgcaacaattatga |
31092987 |
T |
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| Q |
501 |
ttcacttgaaaatactaaccttac |
524 |
Q |
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| T |
31092986 |
ttcacttgaaaatactaaccttac |
31092963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 524
Target Start/End: Original strand, 31048292 - 31048369
Alignment:
| Q |
451 |
ttctcatttaataaaaactt----gcttatatctgatgggtgcaacaattatgattcacttgaaaatactaaccttac |
524 |
Q |
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| T |
31048292 |
ttctcatttaataaaaactttaatgttaatatccgatggctgcaacaattatgattcacatgaaaaaactaaccttac |
31048369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 40 - 233
Target Start/End: Complemental strand, 2179 - 1971
Alignment:
| Q |
40 |
ctccctaaaagcagaatttcttctccaaattcatcaaaaggcacgccgatcatatcaccaaaactccaacactttcaaaacattgtattacctgactccc |
139 |
Q |
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|||||||||| | ||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| || ||| |||||||| |||||||||||||| |
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| T |
2179 |
ctccctaaaaactgaatttcttctccaaattcttcaaaaggcacgccgatcataccaccaccactccaaaaccttcgaaacattgcattacctgactccc |
2080 |
T |
|
| Q |
140 |
actttagaagtaatgattgtaaccatc--------cctgaaatt-------agaacaagttcctaaacaagctagagggttagtccactaatgtgatatt |
224 |
Q |
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||||||||||||||||||||||||||| |||| | || || | || |||||||||||||||||||||||||||||||||||||||| |
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| T |
2079 |
actttagaagtaatgattgtaaccatcagacctctcctgtacttctgactcagcgccagctcctaaacaagctagagggttagtccactaatgtgatatt |
1980 |
T |
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| Q |
225 |
gcatatcca |
233 |
Q |
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| T |
1979 |
gcatatcca |
1971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 249 - 294
Target Start/End: Complemental strand, 1970 - 1925
Alignment:
| Q |
249 |
gatctcatccagttccgggaaagcattttaaccagttctgaaatag |
294 |
Q |
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| T |
1970 |
gatctcatccggttccaggaaagcattttaacctgttctgaaatag |
1925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 31068 - 30980
Alignment:
| Q |
185 |
tcctaaacaagctagagggttagtccactaatgtgatattgcatatccatatcgcaatgattttgatctcatccagttccgggaaagca |
273 |
Q |
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||||||| ||| |||||||||||||||| | | |||||||||||||||| | | | |||||||||| || |||||||| | |||||||| |
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| T |
31068 |
tcctaaaaaaggtagagggttagtccacaactttgatattgcatatccaaacctcgatgattttgaccttatccagtttcaggaaagca |
30980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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