View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20413_low_4 (Length: 452)
Name: NF20413_low_4
Description: NF20413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20413_low_4 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 43876088 - 43876327
Alignment:
| Q |
1 |
ttgaaataataactgaccagaatagtgggaccc-acgaccgtgatcagcggagcacggaacgtccgatcggtgttcagcggagcaagtttgaaatttgtg |
99 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43876088 |
ttgaaataataactgaccagaacagtgggaccccacgaccgtaatcagcggagcacggaacgtccgatcggtgttcagcggagcaagtttgaaatttgtg |
43876187 |
T |
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| Q |
100 |
cgaaaatggatgagaaagagaaaaccctaaaatggagcgaattcgcgccaaaaatggttcccgcaaataaagtcttttacttcaaaacagttatagagaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43876188 |
cgaaaatggatgagaaagagaaaaccctaaaatggagcgaattcgcgccaaaaatggttcccgcaaataaagtcttttacttcaaaacagttatatagaa |
43876287 |
T |
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| Q |
200 |
ggaacatttgtcctatgaagtgttttgatgttttcttttt |
239 |
Q |
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| T |
43876288 |
ggaacatttgtcctatgaagtgttttgatgttttcttttt |
43876327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 240 - 452
Target Start/End: Original strand, 5018010 - 5018224
Alignment:
| Q |
240 |
gggaatttctatggtgaagtcatgataatgannnnnnnggtgaagttaaatttactatatcatatatataatgcagcaatactgtattgtgaagnnnnnn |
339 |
Q |
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| T |
5018010 |
gggaaattctatggtgaagtcatgataatgacttttttagtgaagttaaatttactatatcatatatataatgcaacaatactgtattgtgaaaaaaaaa |
5018109 |
T |
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| Q |
340 |
nnn--taatatacaagattttgtagcaattaaccaccaaaccaacactataagtaccttaattttctaaagtaactcatagcctgtcatccctagcatgc |
437 |
Q |
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| T |
5018110 |
aatactaatatacaagattttgtagccattaaccaccaaaccaacgctataagtaccttaattttcttaagtaactcatagcctgtcatccctggcatgc |
5018209 |
T |
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| Q |
438 |
aatggtctgtgatga |
452 |
Q |
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|||||||| |||||| |
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| T |
5018210 |
aatggtctctgatga |
5018224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 240 - 452
Target Start/End: Complemental strand, 23165886 - 23165673
Alignment:
| Q |
240 |
gggaatttctatggtgaagtcatgataatgannnnnnnggtgaagttaaatttactatatcatatatataatgcagcaatactgtattgtgaagnnnnnn |
339 |
Q |
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| T |
23165886 |
gggaaattctatggtgaagtcatgataatgatttttttagtgaagttaagtttactatatcatatatataatgcagcaatactgtattgtgaaaaaaaaa |
23165787 |
T |
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| Q |
340 |
nnn-taatatacaagattttgtagcaattaaccaccaaaccaacactataagtaccttaattttctaaagtaactcatagcctgtcatccctagcatgca |
438 |
Q |
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| T |
23165786 |
atactaatatacaaaattttgtagcaattaaccaccaaaccaacgctataagtaccttatttttcttaagtaactcatagcctgtcatccctggcatgca |
23165687 |
T |
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| Q |
439 |
atggtctgtgatga |
452 |
Q |
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||||||| |||||| |
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| T |
23165686 |
atggtctctgatga |
23165673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 452
Target Start/End: Original strand, 42883513 - 42883577
Alignment:
| Q |
388 |
aagtaccttaattttctaaagtaactcatagcctgtcatccctagcatgcaatggtctgtgatga |
452 |
Q |
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| T |
42883513 |
aagtaccttaattttcttaagcaactcatagccagtcatccctggcatgcagtagtcagtgatga |
42883577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 280 - 452
Target Start/End: Complemental strand, 9814457 - 9814284
Alignment:
| Q |
280 |
tgaagttaaatttactatatcatatatataatgcagcaatactgtattgtgaagnnnnnnnnn-taatatacaagattttgtagcaattaaccaccaaac |
378 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9814457 |
tgaagttaaatttactacatcatatatataatgcaacaatactctattgtgaaaaaaaaaatactaatatacaagattttgtagcaattaaccaccaaac |
9814358 |
T |
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| Q |
379 |
caacactataagtaccttaattttctaaagtaactcatagcctgtcatccctagcatgcaatggtctgtgatga |
452 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| || |||||||| ||||||||||||||||||||| |
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| T |
9814357 |
caacactataagtaccttaattttcttaagtaactcatagtctctcatccctggcatgcaatggtctgtgatga |
9814284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 240 - 452
Target Start/End: Complemental strand, 42663833 - 42663612
Alignment:
| Q |
240 |
gggaatttctatggtgaagtcatgataatgannnnnnnggtgaagttaaatttactatatcatatatataatgcagcaatactgtattgtg--------- |
330 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42663833 |
gggaaattctatggtgaagtcatgataatgacttttttagtgaagttaaatttactatatcatatatataatgcaacaatactgtattgtagaaaaaaaa |
42663734 |
T |
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| Q |
331 |
aagnnnnnnnnntaatatacaagattttgtagcaattaaccaccaaaccaacactataagtaccttaattttctaaagtaactcatagcctgtcatccct |
430 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42663733 |
aaaaaaaaatactaatatacaagattttgtagccattaaccaccaaaccaacgctataagtaccttaattttcttaagtaactcatagcctgtcatccct |
42663634 |
T |
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| Q |
431 |
agcatgcaatggtctgtgatga |
452 |
Q |
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|||||||||||||| |||||| |
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| T |
42663633 |
ggcatgcaatggtctctgatga |
42663612 |
T |
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