View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20413_low_8 (Length: 361)
Name: NF20413_low_8
Description: NF20413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20413_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 53491601 - 53491937
Alignment:
| Q |
11 |
catcatcatcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaacccttccattcatgtatactctagacattaaaa |
110 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53491601 |
catcaccatcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaatccttccattcatgtatactctagacattaaaa |
53491700 |
T |
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| Q |
111 |
gcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491701 |
gcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttt |
53491800 |
T |
|
| Q |
211 |
tgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaacaggaggaaaggcctcaaatactcatt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491801 |
tgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaacaggaggaaaggcctcaaatactcatt |
53491900 |
T |
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| Q |
311 |
acagatgccaaagatgcatatattaaggcagattcct |
347 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
53491901 |
acagatgccaaagatgcatatattaaggcagattcct |
53491937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 53499194 - 53499468
Alignment:
| Q |
11 |
catcatcatcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaacccttccattcatgtatactctagacattaaaa |
110 |
Q |
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||||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
53499194 |
catcaccattgctccaatctgttaaataagcggactaaaatataaatgcaatcgtacataaaaggagttcttccattcatgtatactctagacattaaaa |
53499293 |
T |
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| Q |
111 |
gcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttt |
210 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53499294 |
gcttacagttcgagtagaatagccccatgagttctgccaaaccattgctttctctcccttcttatcttcaaattttacctcgaacttttcagcaaacttt |
53499393 |
T |
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| Q |
211 |
tgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaaca |
285 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53499394 |
tgtcccaagcaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaactgaaca |
53499468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 99 - 285
Target Start/End: Original strand, 16070390 - 16070576
Alignment:
| Q |
99 |
tagacattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttt |
198 |
Q |
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|||||||| |||||||||||||||||||||| | |||||||| |||||||||||||||| ||||||| ||||| |||||||||| |||| ||| ||||| |
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| T |
16070390 |
tagacattgaaagcttacagttcgagtagaaaacccccatgagttctgccaaaccattgttttctctaccttcttatcttcaaagtttatctcaaacttc |
16070489 |
T |
|
| Q |
199 |
tcagcaaacttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaaca |
285 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||| ||||||||||| |
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| T |
16070490 |
tcagcaaacttttgtcccaaacaatgggtagctgcaccttgtatcccacgaccaatgtttggaataaaagcctagaaaaattgaaca |
16070576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 53499888 - 53499936
Alignment:
| Q |
299 |
caaatactcattacagatgccaaagatgcatatattaaggcagattcct |
347 |
Q |
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|||| ||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
53499888 |
caaagactcattacagatgccaaaaatgcatatagtaaggcagattcct |
53499936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 108 - 276
Target Start/End: Complemental strand, 45355076 - 45354908
Alignment:
| Q |
108 |
aaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaac |
207 |
Q |
| |
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||||||||||||||||||| |||| |||| || |||||||| ||||||||||||||||||||| || |||| | |||| ||| ||| ||| |||||| |
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| T |
45355076 |
aaagcttacagttcgagtactataggcccacgagttctgccagaccattgctttctctcccttctcattttcatagtttatctcaaacattttagcaaaa |
45354977 |
T |
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| Q |
208 |
ttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaa |
276 |
Q |
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||||||| ||||||||| | ||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
45354976 |
ttttgtcccaaacaatgagaagttgcaccttgtataccacgaccagtgtttggaataaatgcctaggaa |
45354908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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