View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20414_high_2 (Length: 532)
Name: NF20414_high_2
Description: NF20414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20414_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 15 - 532
Target Start/End: Complemental strand, 41422335 - 41421820
Alignment:
| Q |
15 |
aacatcatggtcatgtcatgtgattcatgattttttagtgtagtatatgcgtttcatatatatcatattatgcttttgagttaaaaatctagataatcca |
114 |
Q |
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| T |
41422335 |
aacatcatggtcatgtcatgtgattcatgattttttagtgtagtatatgcgtttcatatatatcatattatgcttttgagttaaaaatctagataatcca |
41422236 |
T |
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| Q |
115 |
attaggcacaaacaagaccatatgtgataatgctatttgacacgtagggacaagtgatattaaatcacgagtagtggcaaaacttggcttgttggaaagt |
214 |
Q |
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| T |
41422235 |
attaggcacaaacaagaccatatgtgataatgctatttgacacgtagggacaagtgatattaaatcacgagtagtggcaaaacttggcttgttggaaagt |
41422136 |
T |
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| Q |
215 |
tataaactagtggttcaaaatgggcgatgagtggtcatgacaaaaaatcatccggaagatacttgtnnnnnnnntccaaaatagaaagttgcgtaaacat |
314 |
Q |
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| T |
41422135 |
tataaactagtggttcaaaatgggcgatgagtggtcatgacaaaaaatcatccggaagatacttgtaaaaaaaatccaaaatagaaagttgcgtaaacat |
41422036 |
T |
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| Q |
315 |
attataataattatggcatatcataaaataaatgaagaaaacgagggaagttgtttacaagaaataatannnnnnnncttctaccnnnnnnncaataaat |
414 |
Q |
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| T |
41422035 |
attataataattatggcatatcataaaataaatgaagaaaacgagggaagttatttacaagaaataatattttttt--ttctaccaaaaaaacaagaaat |
41421938 |
T |
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| Q |
415 |
aataatttttagaagagggttgtaaacttgtgatggagatggggatattattatttattggattatcacgttacatgcacaaaattttcagcaccgttta |
514 |
Q |
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| T |
41421937 |
aataatttttagaagaggattgtaaacttgtaatagcaatggggatattattatttattggattatcacgttacatgcacaaaattttcagcaccgttta |
41421838 |
T |
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| Q |
515 |
acctaaatctccatcgac |
532 |
Q |
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| T |
41421837 |
acctaaatctccatcgac |
41421820 |
T |
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