View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20414_high_3 (Length: 388)
Name: NF20414_high_3
Description: NF20414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20414_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 13778848 - 13779211
Alignment:
| Q |
11 |
atcatcaacaaagcattgattgtcatttttaaattcaattcaactgtttcaacagccttgcagtacatcataaatatgctgtctagacagttctaaacat |
110 |
Q |
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| T |
13778848 |
atcatcaacaaagcattgattgtcatttttaaattcaattcaactgtttcaacagccttgcagtacatcataaatatgctgtctagacagttctaaacat |
13778947 |
T |
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| Q |
111 |
agatttcttatagttactccctccatctcatgtattaagcgtcattgtcatttatagatatacacactttttaagaaaattattctgtgtgctagtaatt |
210 |
Q |
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| T |
13778948 |
agatttcttatagttactccctccatctcatgtattaagtgtcattgtcatttatagatatacacactttttaagaaaattattctgtgtgctagtaatt |
13779047 |
T |
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| Q |
211 |
tctatgataaaatgtgtttcatttactaaataagagtatatcagtnnnnnnntattggtattttaaaatgacaaataatgtgagacaaacaatactctaa |
310 |
Q |
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| T |
13779048 |
tctatgataaaatgtgtttcatttactaaataagagtatatcagtaaaaaaatattggtattttaaaatgacaaataatgtgagataaacaatactctaa |
13779147 |
T |
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| Q |
311 |
atatgatacggagggagtaattaattgttatatgacaaactcattaatgtcccatgttcacagg |
374 |
Q |
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| T |
13779148 |
atatgatacggagggagtaattaattgttatatgacaaactcattaatgtcccatgttcacagg |
13779211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 38798381 - 38798413
Alignment:
| Q |
206 |
taatttctatgataaaatgtgtttcatttacta |
238 |
Q |
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| T |
38798381 |
taatttctatgataaaatgagtttcatttacta |
38798413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 5399330 - 5399363
Alignment:
| Q |
207 |
aatttctatgataaaatgtgtttcatttactaaa |
240 |
Q |
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| T |
5399330 |
aatttctatgataaaatgtgtttcatttactaaa |
5399363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 45842394 - 45842358
Alignment:
| Q |
264 |
attggtattttaaaatgacaaataatgtgagacaaac |
300 |
Q |
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| T |
45842394 |
attggtattttaaaatgacaaataatatgagacaaac |
45842358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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