View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20414_low_1 (Length: 614)
Name: NF20414_low_1
Description: NF20414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20414_low_1 |
 | |
|
| [»] scaffold1819 (2 HSPs) |
| | |
|
| [»] scaffold1104 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 34406699 - 34407101
Alignment:
| Q |
17 |
agaaaggagtaggagtttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcctaaagataattgatg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34406699 |
agaaaggagtaggagtttgtggtggctttataaccctttcaattatc--ccctttggtgatattcatggtgtgttctctagagcctaaagataattgatg |
34406796 |
T |
|
| Q |
117 |
tt--tatgggatgcttcaatgttgatttgga-tttggattaagagaggagttgcaatttatagatataaaagtaaactaattaataannnnnnnaaacac |
213 |
Q |
| |
|
|| |||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
34406797 |
ttcatatgcgatgcttccatgttgatttggattttggattaagagaggagttgcaatttatagatataaaagtaaactaattaataattttttcaaaaac |
34406896 |
T |
|
| Q |
214 |
gaaatatgaaatttattctcatacaattccacttaactttta------------------atatttactttactttgtgtttgaaaagtctatttttcgt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34406897 |
gaaatatgaaatttattctcatacaattccacttaacttttaagatggttgtaaaacatgatatatactttactttgtgtttgaaaagtctatttttcgt |
34406996 |
T |
|
| Q |
296 |
gataatagtgtatggggaacaccaaactctgcttgtcagaggtggatcgcgtggtggatgacttttgatcgtgattcctgacacattgttagaaagttat |
395 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
34406997 |
gatgatagtgtctggggaacaccaaactctgcttgccagagatggatcgtgtggtggatgacttttgatcgtgattcctcacacattgtgagaaagttat |
34407096 |
T |
|
| Q |
396 |
tctca |
400 |
Q |
| |
|
||||| |
|
|
| T |
34407097 |
tctca |
34407101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 454 - 574
Target Start/End: Original strand, 34407195 - 34407315
Alignment:
| Q |
454 |
tgataaatgttctaatcaaagacgtgtctattataaaagaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgt |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34407195 |
tgataaatgttctaatcaaagacgtgtctattataaaagaaaaatgttatttcaagcgaaataaaattatcccgagaatttcaagacacatgtggcttgt |
34407294 |
T |
|
| Q |
554 |
atgccacccatccactagttt |
574 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34407295 |
atgccacccatccactagttt |
34407315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 88 - 450
Target Start/End: Complemental strand, 34713881 - 34713506
Alignment:
| Q |
88 |
tgttctctagagcctaaagataattgatgtttatgggatgcttcaatgttgatttggatttggattaagagaggagttgcaatttatagatataaaagta |
187 |
Q |
| |
|
||||||||||||||||| || | ||| |||| ||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| || | | || |
|
|
| T |
34713881 |
tgttctctagagcctaatgagagttgttgttcatgagatgcttccatgttgttttggatttggattaagagaggagttgcaatttatagagatgagaata |
34713782 |
T |
|
| Q |
188 |
aactaattaataannnnnnnaaacacgaaatatgaaatttattctcatacaattccacttaacttttaatat--tt----------------actttact |
269 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||| |||||||||| || || |||||||| |
|
|
| T |
34713781 |
aactaattaataatatttttca--------tatgaaatttattctcatacaattccatataacttttaagatggttgtaaagcatgatgtccactttact |
34713690 |
T |
|
| Q |
270 |
ttgtgtttgaaaagtcta-tttttcgtgataatagtgtatggggaacac--caaactctgcttgtcagaggtggatcgcgtggtggatgacttttgatcg |
366 |
Q |
| |
|
||| ||| ||||||| || ||||||||||| |||||| || |||||| |||||||| ||| | |||||||||||| ||||| ||||||||| |||| |
|
|
| T |
34713689 |
ttgcgttcgaaaagtttattttttcgtgattatagtgcgtgatgaacacaaaaaactctgtttgcctgaggtggatcgcatggtgtatgacttttaatcg |
34713590 |
T |
|
| Q |
367 |
tgattcctgacacattgttagaaagttattctcaaatatttttcgtgatgacagtgcatggtgaacacgaaactacgcctgcca |
450 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||||||| |||||| |||||| ||| | ||||| ||||||||| ||| |||||| |
|
|
| T |
34713589 |
tgattcccgacacaatgttagaaagttactctcaaatgtttttcatgatgagagtacgtggtgtacacgaaaccacgtctgcca |
34713506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 34710268 - 34710097
Alignment:
| Q |
26 |
taggagtttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcctaaagataattgatgtttatggga |
125 |
Q |
| |
|
|||||| ||| | ||| ||||||||| ||| | |||| | ||||| ||||||||| ||| ||||||||| |||||||||| | ||| |||| ||| || |
|
|
| T |
34710268 |
taggagattgcgatgggtttataaccttttgagttatattcccttcggtgatattgatg---tgttctctatagcctaaagagagttgttgttcatgaga |
34710172 |
T |
|
| Q |
126 |
tgcttcaatgttgatttggatttggattaagagaggagttgcaatttatagatataaaagtaaactaattaataa |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
34710171 |
tgcttccatgttgatttggatttggattaagagaggagttgcaatttatagagataagaataaactaattaataa |
34710097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 319 - 442
Target Start/End: Complemental strand, 34709967 - 34709844
Alignment:
| Q |
319 |
aaactctgcttgtcagaggtggatcgcgtggtggatgacttttgatcgtgattcctgacacattgttagaaagttattctcaaatatttttcgtgatgac |
418 |
Q |
| |
|
|||||| ||||| |||||||||||| ||||||| |||| |||| ||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34709967 |
aaactccgcttgccagaggtggatcacgtggtgtatgagttttaatcgtgatttccgacacattgttagaaagttattctcaaatgtttttcgtgatgac |
34709868 |
T |
|
| Q |
419 |
agtgcatggtgaacacgaaactac |
442 |
Q |
| |
|
| || |||||||||||||||||| |
|
|
| T |
34709867 |
aatgtgtggtgaacacgaaactac |
34709844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 333 - 402
Target Start/End: Complemental strand, 34709836 - 34709767
Alignment:
| Q |
333 |
agaggtggatcgcgtggtggatgacttttgatcgtgattcctgacacattgttagaaagttattctcaaa |
402 |
Q |
| |
|
||||||||||| ||||||||||| |||| ||||| |||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
34709836 |
agaggtggatcacgtggtggatggctttcaatcgtaattcctgatacactgttagaaagttactctcaaa |
34709767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 488 - 600
Target Start/End: Complemental strand, 862142 - 862030
Alignment:
| Q |
488 |
aaaagaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatct |
587 |
Q |
| |
|
||||| |||||| ||||||||||||||||| | ||||||||| |||||| | |||||||| | |||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
862142 |
aaaaggaaaatgctatttcaagcgaaatagcactatcccgagtatttcacggcacatgtggcatgtatgtcactcatccactagtttatgatttccatct |
862043 |
T |
|
| Q |
588 |
ttttctccccacc |
600 |
Q |
| |
|
||||||||||||| |
|
|
| T |
862042 |
ttttctccccacc |
862030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 596
Target Start/End: Complemental strand, 47651288 - 47651182
Alignment:
| Q |
490 |
aagaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatcttt |
589 |
Q |
| |
|
|||||||||| ||||| ||| ||||||| | |||| ||| ||||| |||||||||| | |||||| || |||||||||| |||||||||||||||||| |
|
|
| T |
47651288 |
aagaaaaatgatatttaaagtgaaatagtaatatctcgaatttttcacgacacatgtggcatgtatgtcatccatccactattttatgattttcatcttt |
47651189 |
T |
|
| Q |
590 |
ttctccc |
596 |
Q |
| |
|
||||||| |
|
|
| T |
47651188 |
ttctccc |
47651182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 492 - 597
Target Start/End: Complemental strand, 37043550 - 37043445
Alignment:
| Q |
492 |
gaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatcttttt |
591 |
Q |
| |
|
|||||||| ||||||| ||||||| || | |||||||| |||| ||||||||||| | ||||||||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
37043550 |
gaaaaatgctatttcacacgaaataaaactgtcccgagattttccagacacatgtggcatgtatgccatccatccattagtttatgatttccatcttttt |
37043451 |
T |
|
| Q |
592 |
ctcccc |
597 |
Q |
| |
|
|||||| |
|
|
| T |
37043450 |
ctcccc |
37043445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 538 - 600
Target Start/End: Complemental strand, 20614917 - 20614855
Alignment:
| Q |
538 |
gacacatgtgacttgtatgccacccatccactagtttatgattttcatctttttctccccacc |
600 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20614917 |
gacacatgtggcatgtatttcacccatccactagtttatgatttccatctttttctccccacc |
20614855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 492 - 597
Target Start/End: Complemental strand, 16317773 - 16317668
Alignment:
| Q |
492 |
gaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatcttttt |
591 |
Q |
| |
|
|||||||||||||||| ||||||| || | ||| |||| |||| ||||||||||| | ||||||||| ||||||| ||| ||||||||| ||||||| | |
|
|
| T |
16317773 |
gaaaaatgttatttcacacgaaataaaactgtcctgagattttccagacacatgtggcatgtatgccatccatccattagattatgatttccatctttct |
16317674 |
T |
|
| Q |
592 |
ctcccc |
597 |
Q |
| |
|
|||||| |
|
|
| T |
16317673 |
ctcccc |
16317668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 532 - 597
Target Start/End: Complemental strand, 2694649 - 2694584
Alignment:
| Q |
532 |
tttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatctttttctcccc |
597 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| |||||||||| |||| |||||||||| |
|
|
| T |
2694649 |
tttcaagacacatgtggcatgtatgccacccatccacagttttatgatttccatcattttctcccc |
2694584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 492 - 600
Target Start/End: Complemental strand, 5013767 - 5013659
Alignment:
| Q |
492 |
gaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatcttttt |
591 |
Q |
| |
|
|||||||| ||||| |||||||||| | |||||| | |||||| ||||||||| | |||||||||| ||||||||||| |||||||| || |||||| |
|
|
| T |
5013767 |
gaaaaatgctatttaaagcgaaataacactatcccaaatatttcaccacacatgtggcatgtatgccactcatccactagtctatgatttccaccttttt |
5013668 |
T |
|
| Q |
592 |
ctccccacc |
600 |
Q |
| |
|
||||||||| |
|
|
| T |
5013667 |
ctccccacc |
5013659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 600
Target Start/End: Complemental strand, 24255225 - 24255167
Alignment:
| Q |
542 |
catgtgacttgtatgccacccatccactagtttatgattttcatctttttctccccacc |
600 |
Q |
| |
|
|||||| | |||||||||| | |||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
24255225 |
catgtggcatgtatgccactcgtccactagtttatgatttccatctttttctctccacc |
24255167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1819 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold1819
Description:
Target: scaffold1819; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 878 - 941
Alignment:
| Q |
38 |
gtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcc |
101 |
Q |
| |
|
||||||||||||| |||| |||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
878 |
gtggctttataactcttttaattatctcctctttggccgtattaatggtgtgttctctagagcc |
941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1819; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 340 - 272
Alignment:
| Q |
33 |
ttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcc |
101 |
Q |
| |
|
|||||||| |||||||| |||| |||||||||| | |||| ||||| |||| ||||||||||||||| |
|
|
| T |
340 |
ttgtggtgattttataactcttttaattatctcctccttggccatattaatggcgtgttctctagagcc |
272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold1104
Description:
Target: scaffold1104; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 2400 - 2463
Alignment:
| Q |
38 |
gtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcc |
101 |
Q |
| |
|
||||||||||||| |||| |||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
2400 |
gtggctttataactcttttaattatctcctctttggccgtattaatggtgtgttctctagagcc |
2463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 1862 - 1794
Alignment:
| Q |
33 |
ttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcc |
101 |
Q |
| |
|
|||||||| |||||||| |||| |||||||||| | |||| ||||| |||| ||||||||||||||| |
|
|
| T |
1862 |
ttgtggtgattttataactcttttaattatctcctccttggccatattaatggcgtgttctctagagcc |
1794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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