View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20414_low_5 (Length: 365)
Name: NF20414_low_5
Description: NF20414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20414_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 175 - 349
Target Start/End: Original strand, 9736786 - 9736961
Alignment:
| Q |
175 |
agtgtggttgagttatgtgatttatttt-tgtccaatgtggttgaattatgtgtgagagtgcgatgctctccaactcgtgaccaacgtggatatcatgca |
273 |
Q |
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| T |
9736786 |
agtgtggttgagtcatgtgattttttttttgtccaatgtggttgaattatgtgtgagagtgcgatgctctccaactcgtgaccaacgtggatatcatgca |
9736885 |
T |
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| Q |
274 |
tgaaaatgaaggtgaaagaatttttaataatgcacaattgcacatggtgtgggtgaggtgattcttatttacattt |
349 |
Q |
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| T |
9736886 |
tgaaaatgaaggtgaaagaatttttaataatgcacaattgcacatggtgtgggtgaggtgattcttatttacattt |
9736961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 9736551 - 9736638
Alignment:
| Q |
10 |
aagaatataatttaaatttacttttgaaaccactagcaacaatattgattgaagaagagaatgatgaattt-aaatggagttgtttga |
96 |
Q |
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| T |
9736551 |
aagaaaataatttaaatttacttttgaaaccactggcaacaatattgattgaaggagagaatgatgaatttaaaatggagttgtttga |
9736638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 9736658 - 9736723
Alignment:
| Q |
91 |
gtttgagtagattagatggtatacattgttgtcttatatagcaagaaaaagaaactgtggttgagt |
156 |
Q |
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| T |
9736658 |
gtttgagtcgattagattgtatacattgttgtcttataaagcaagaaaaagaaaccgtggttgagt |
9736723 |
T |
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