View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20414_low_8 (Length: 243)
Name: NF20414_low_8
Description: NF20414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20414_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 63 - 227
Target Start/End: Original strand, 41420801 - 41420965
Alignment:
| Q |
63 |
tgatgtagtcatctgtattaacattcttattattaatgaaatgaggtaaagttattgaagtaagaaagtactttatctttactaatggaaatgagttaaa |
162 |
Q |
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| T |
41420801 |
tgatgtagtcgtttgtattaatattcttattattaatgaaatgaggtaaacttattgaagtaaaaaagtactttatctttactaatggaaatgagttaaa |
41420900 |
T |
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| Q |
163 |
ctcgtttcaagaataataggaaagctaataagatgatgaaacgatcataaccccattattgagag |
227 |
Q |
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| T |
41420901 |
atcgtttcaagaataataggaaagctaataagatgatgaaacgatcataaccccattattgagag |
41420965 |
T |
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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 41420718 - 41420803
Alignment:
| Q |
16 |
atatgcagggtgaagagcagaattctaactaattttcatattttcactgatgtagtcatctgtattaacattcttattattaatga |
101 |
Q |
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| T |
41420718 |
atatgcaaggtgaagagtagaattctaactaattttcatattttcactgatgtagtcgtttgtattaatattcttattattaatga |
41420803 |
T |
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