View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20415_high_2 (Length: 446)

Name: NF20415_high_2
Description: NF20415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20415_high_2
NF20415_high_2
[»] chr3 (14 HSPs)
chr3 (1-433)||(6788903-6789335)
chr3 (206-432)||(6558093-6558316)
chr3 (277-433)||(6526849-6527000)
chr3 (1-142)||(6558639-6558782)
chr3 (277-433)||(6848429-6848581)
chr3 (230-287)||(6549630-6549687)
chr3 (35-119)||(6938658-6938742)
chr3 (38-146)||(6527369-6527474)
chr3 (38-146)||(6848950-6849055)
chr3 (234-284)||(6939130-6939180)
chr3 (283-413)||(6939225-6939359)
chr3 (206-275)||(8466372-8466441)
chr3 (231-284)||(6943498-6943551)
chr3 (166-202)||(6796478-6796514)
[»] scaffold0425 (2 HSPs)
scaffold0425 (277-433)||(11556-11707)
scaffold0425 (38-146)||(12055-12160)
[»] chr1 (2 HSPs)
chr1 (281-317)||(17793259-17793295)
chr1 (88-128)||(7982062-7982102)


Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 6789335 - 6788903
Alignment:
Q  1 cttatcctacactcattagagttaacatttcactaatgaactgttgtggctttttgatcagcacagcagaaccctctagtgatatagatagataaaaata 100  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6789335 cttatcctatactcattagagttaacatt-cactaatgaactgttgtggctttttgatcagcacagcagaaccctctagtgatataaatagataaaaata 6789237  T
Q  101 ttcacaaactgagagaaagcaatgaattaaaatcagaagtactgcactgataaaaacattcaaatgaagaaaatattgagccacctgcgaaattgtatag 200  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789236 ttcacaaactgagagaaattaatgaattaaaatcagaagtactgcactgataaaaacattcaaatgaagaaaatattgagccacctgcgaaattgtatag 6789137  T
Q  201 catgtaacatgtttgaatcggaagtttcaaaccaattttgcatgtagactgtgatccaaacaccatggaagctcctatccaccaaaattccctttaacaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789136 catgtaacatgtttgaatcggaagtttcaaaccaattttgcatgtagactgtgatccaaacaccatggaagctcctatccaccaaaattccctttaacaa 6789037  T
Q  301 caaagtggcatgtcattcaattttttacgactttttcttaacaattaaaaagagaaataaaacgaaaatcgcagaaaaggctacatgacgtcctcactat 400  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789036 caaagtggcatgtcattcaattttttatgacttcttcttaacaattaaaaagagaaataaaacgaaaatcgcagaaaaggctacatgacgtcctcactat 6788937  T
Q  401 gtaattgtttgattcaagtaattc-attggcttc 433  Q
    |||||||||||||||||||||||| |||||||||    
T  6788936 gtaattgtttgattcaagtaattcaattggcttc 6788903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 206 - 432
Target Start/End: Complemental strand, 6558316 - 6558093
Alignment:
Q  206 aacatgtttgaatcggaagtttcaaaccaattttgcatgtagactgtgatccaaacaccatggaagctcctatccacca--aaattccctttaacaacaa 303  Q
    |||||||||| ||| |||||| |||||||||||  || |||||||||| ||||||||||||||||||||| || |||||   |||||||||| |||||||    
T  6558316 aacatgtttggatccgaagttccaaaccaatttatcacgtagactgtgttccaaacaccatggaagctcccattcaccatgtaattccctttgacaacaa 6558217  T
Q  304 agtggcatgtcattcaattttttacgactttttcttaacaattaaaaagagaaataaaacgaaaatcgcag-aaaaggctacatgacgtcctcactatgt 402  Q
     |||||||||||||||||||||||      |  ||||||||||||||| | |||||||| ||||||| | | ||||||| ||||||| ||||||| ||||    
T  6558216 ggtggcatgtcattcaatttttta------tcacttaacaattaaaaatataaataaaatgaaaatcacggtaaaaggccacatgacatcctcaccatgt 6558123  T
Q  403 aattgtttgattcaagtaattcattggctt 432  Q
    ||||  ||||| |||||||||||| |||||    
T  6558122 aatttgttgatgcaagtaattcatcggctt 6558093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 277 - 433
Target Start/End: Complemental strand, 6527000 - 6526849
Alignment:
Q  277 atccaccaaaattccctttaacaacaaagtggcatgtcattcaattttttacgactttttcttaacaattaaaaagagaaataaaacgaaaatcgcag-a 375  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||      |  ||||||||||||||| | |||||||| ||||||| | | |    
T  6527000 atccaccaaaattcccttaaacaacaaagtggcatgtcattcaatttttta------tcacttaacaattaaaaatataaataaaatgaaaatcacggta 6526907  T
Q  376 aaaggctacatgacgtcctcactatgtaattgtttgattcaagtaattcattggcttc 433  Q
    |||||| ||||||| ||||||| ||||||||| ||||| ||| |||||||| ||||||    
T  6526906 aaaggccacatgacatcctcaccatgtaattggttgatgcaattaattcatcggcttc 6526849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 6558782 - 6558639
Alignment:
Q  1 cttatcctacactcattagagttaacatttcactaatgaactgttgtggctttttgatcagcacagcagaaccctcta---gtgatatagatagataaaa 97  Q
    |||||||||||| || | ||||||||||  |||||||||||  ||||||||||||||||||||||| |||||| ||||   ||||||||||||||||||     
T  6558782 cttatcctacacccactggagttaacata-cactaatgaaccattgtggctttttgatcagcacaggagaaccttctactagtgatatagatagataaac 6558684  T
Q  98 atattcacaaactgagagaaagcaatgaattaaaatcagaagtac 142  Q
     |||||||||||||||| |||| | ||||||| ||||||||||||    
T  6558683 ctattcacaaactgagaaaaagtattgaattacaatcagaagtac 6558639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 433
Target Start/End: Complemental strand, 6848581 - 6848429
Alignment:
Q  277 atccaccaaaattccctttaacaacaaagtggcatgtcattcaattttttacgactttttcttaacaattaaaaagagaaataaaacgaaaatcgcag-a 375  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||     | |  ||||||||||||||| | |||||||| ||||||| | | |    
T  6848581 atccaccaaaattcccttaaacaacaaagtggcatgtcattcaatttttt-----tatcacttaacaattaaaaatataaataaaatgaaaatcacggta 6848487  T
Q  376 aaaggctacatgacgtcctcactatgtaattgtttgattcaagtaattcattggcttc 433  Q
    |||||| ||||| | ||||||| ||||||||| ||||| ||| |||||||| ||||||    
T  6848486 aaaggccacatggcatcctcaccatgtaattggttgatgcaattaattcatcggcttc 6848429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 6549687 - 6549630
Alignment:
Q  230 aaccaattttgcatgtagactgtgatccaaacaccatggaagctcctatccaccaaaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6549687 aaccaattttgcatgtagactgtgatccaaacaccatggaagctcccatccaccaaaa 6549630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 6938658 - 6938742
Alignment:
Q  35 aatgaactgttgtggctttttgatcagcacagcagaaccctctagtgatatagatagataaaaatattcacaaactgagagaaag 119  Q
    ||||||||||||||||||||||||||||||||||||||| |||| | ||  |||||||||||  |||||||||||||||| ||||    
T  6938658 aatgaactgttgtggctttttgatcagcacagcagaaccttctaattatgcagatagataaacttattcacaaactgagaaaaag 6938742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 6527474 - 6527369
Alignment:
Q  38 gaactgttgtggctttttgatcagcacagcagaaccctctagtgatatagatagataaaaatattcacaaactgagagaaagcaatgaattaaaatcaga 137  Q
    ||||||||||||||||||||   |||||| |||||| |||| ||||  ||| |||||||  |||||||||||||||| |||| ||||||||| |||||||    
T  6527474 gaactgttgtggctttttga---gcacagaagaaccttctaatgatgcagaaagataaacttattcacaaactgagaaaaagtaatgaattacaatcaga 6527378  T
Q  138 agtactgca 146  Q
    |||||||||    
T  6527377 agtactgca 6527369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 6849055 - 6848950
Alignment:
Q  38 gaactgttgtggctttttgatcagcacagcagaaccctctagtgatatagatagataaaaatattcacaaactgagagaaagcaatgaattaaaatcaga 137  Q
    ||||||||||||||||||||   |||||| |||||| |||| ||||  ||| |||||||  |||||||||||||||| |||| ||||||||| |||||||    
T  6849055 gaactgttgtggctttttga---gcacagaagaaccttctaatgatgcagaaagataaacttattcacaaactgagaaaaagtaatgaattacaatcaga 6848959  T
Q  138 agtactgca 146  Q
    |||||||||    
T  6848958 agtactgca 6848950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 6939130 - 6939180
Alignment:
Q  234 aattttgcatgtagactgtgatccaaacaccatggaagctcctatccacca 284  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  6939130 aattttgcatgtagactgtgatccaaacaccatggaagctcccacccacca 6939180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 413
Target Start/End: Original strand, 6939225 - 6939359
Alignment:
Q  283 caaaattccctttaacaacaaagtggca---tgtcattcaattttttacgactttttcttaacaattaaaaagagaaataaaacgaaaatcgcag-aaaa 378  Q
    ||||||||| ||| | ||||||||||||   ||||||||||||||| |  |||| ||||||||| ||||||| |||||||||| |||||  | || ||||    
T  6939225 caaaattccatttgaaaacaaagtggcagcatgtcattcaatttttgatcacttcttcttaacacttaaaaaaagaaataaaatgaaaactggagtaaaa 6939324  T
Q  379 ggctacatgacgtcctcactatgtaattgtttgat 413  Q
    ||| ||||||| |||||||  |||||||| |||||    
T  6939325 ggccacatgacatcctcaccgtgtaattgattgat 6939359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 8466372 - 8466441
Alignment:
Q  206 aacatgtttgaatcggaagtttcaaaccaattttgcatgtagactgtgatccaaacaccatggaagctcc 275  Q
    |||| ||||||||  |||||| ||||||||||||  | |||||||||||||||||| |||||||||||||    
T  8466372 aacaagtttgaattagaagttccaaaccaattttttacgtagactgtgatccaaaccccatggaagctcc 8466441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 6943498 - 6943551
Alignment:
Q  231 accaattttgcatgtagactgtgatccaaacaccatggaagctcctatccacca 284  Q
    |||||||||| | ||||||||||||||||||| ||| ||||||||  |||||||    
T  6943498 accaattttgtacgtagactgtgatccaaacatcatcgaagctcccgtccacca 6943551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 6796514 - 6796478
Alignment:
Q  166 gaagaaaatattgagccacctgcgaaattgtatagca 202  Q
    |||||||||||  ||||||||||||||||||||||||    
T  6796514 gaagaaaatatcaagccacctgcgaaattgtatagca 6796478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 277 - 433
Target Start/End: Complemental strand, 11707 - 11556
Alignment:
Q  277 atccaccaaaattccctttaacaacaaagtggcatgtcattcaattttttacgactttttcttaacaattaaaaagagaaataaaacgaaaatcgcag-a 375  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||      |  ||||||||||||||| |  ||||||| ||||||| | | |    
T  11707 atccaccaaaattcccttaaacaacaaagtggcatgtcattcaatttttta------tcacttaacaattaaaaatattaataaaatgaaaatcacggta 11614  T
Q  376 aaaggctacatgacgtcctcactatgtaattgtttgattcaagtaattcattggcttc 433  Q
    |||||| ||||||| ||||||| ||||||||| ||||| ||| |||||||| ||||||    
T  11613 aaaggccacatgacatcctcaccatgtaattggttgatgcaattaattcatcggcttc 11556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 12160 - 12055
Alignment:
Q  38 gaactgttgtggctttttgatcagcacagcagaaccctctagtgatatagatagataaaaatattcacaaactgagagaaagcaatgaattaaaatcaga 137  Q
    ||||||||||||||||||||   |||||| |||||| |||| ||||  ||| |||||||  |||||||||||||||| |||| ||||||||| |||||||    
T  12160 gaactgttgtggctttttga---gcacagaagaaccttctaatgatgcagaaagataaacttattcacaaactgagaaaaagtaatgaattacaatcaga 12064  T
Q  138 agtactgca 146  Q
    |||||||||    
T  12063 agtactgca 12055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 317
Target Start/End: Original strand, 17793259 - 17793295
Alignment:
Q  281 accaaaattccctttaacaacaaagtggcatgtcatt 317  Q
    |||||||||||||||||||||||||||| ||||||||    
T  17793259 accaaaattccctttaacaacaaagtggtatgtcatt 17793295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 7982102 - 7982062
Alignment:
Q  88 atagataaaaatattcacaaactgagagaaagcaatgaatt 128  Q
    ||||||||| ||||||||||||||||| |||| ||||||||    
T  7982102 atagataaacatattcacaaactgagaaaaagtaatgaatt 7982062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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