View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20415_low_3 (Length: 373)
Name: NF20415_low_3
Description: NF20415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20415_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 37558270 - 37557925
Alignment:
| Q |
18 |
gtaatgatagtatttctctgggtctggacaaagatcctgcagaatttcacctttgattagttcgcttcaaacaccgacaaatatgaaaatatcaacgtct |
117 |
Q |
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| T |
37558270 |
gtaatgatagtatttctctgggtctggacaaagatcctgcagaatttcacctttgattagttcgcttcaaacaccgacaaatatgaaaatatcaacgtct |
37558171 |
T |
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| Q |
118 |
tttaatttacaatacctgattagcatgcatctttttcacaaagattttgaatatatcaaaattttgtttctggaataattcttctgtcaaacgtaggtat |
217 |
Q |
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| T |
37558170 |
tttaatttacaatacctgattagcatgcatctttttcacaaagattttgaatatatcaaaattttgtttctggaataattcttctgtcaaacgtaggtat |
37558071 |
T |
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| Q |
218 |
gtgactccatacatccttagttttggagggccctttttgttaacaccatttggccttgcatttagaaggatttggttgtaaccttcactgtcataccttg |
317 |
Q |
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| T |
37558070 |
gtgactccatacatccttagttttggagggccctttttgttaacaccatttggccttgcatttagaaggatttggttgtaaccttcactgtcataccttg |
37557971 |
T |
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| Q |
318 |
gaagtgcattttccccagcaacttcaaggttctctctccattcatc |
363 |
Q |
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| T |
37557970 |
gaagtgcattttccccagcaacttcaaggttctctctccatccatc |
37557925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 131 - 357
Target Start/End: Complemental strand, 15504394 - 15504168
Alignment:
| Q |
131 |
acctgattagcatgcatctttttcacaaagattttgaatatatcaaaattttgtttctggaataattcttctgtcaaacgtaggtatgtgactccataca |
230 |
Q |
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| T |
15504394 |
acctgatctgcatgcatctttaccacaaactttttgaatatatcaaaatttgattgttgcattagatcatctgatagacgaaggtatgttactccataca |
15504295 |
T |
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| Q |
231 |
tccttagttttggagggccctttttgttaacaccatttggccttgcatttagaaggatttggttgtaaccttcactgtcataccttggaagtgcattttc |
330 |
Q |
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| T |
15504294 |
tccgaagttttggagggccgtctttgttgaccccttgtggtcttgcattcagtatgatttggttataagctgttgcatcataccttgaaagtgcattttc |
15504195 |
T |
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| Q |
331 |
cccagcaacttcaaggttctctctcca |
357 |
Q |
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| T |
15504194 |
gccagcaacttcaatgttttctctcca |
15504168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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