View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20415_low_4 (Length: 330)

Name: NF20415_low_4
Description: NF20415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20415_low_4
NF20415_low_4
[»] chr4 (1 HSPs)
chr4 (18-315)||(44130213-44130508)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 44130213 - 44130508
Alignment:
Q  18 aaaagaagaggtgggagtgtaatgatggttagggatattggtcagagagaaagggaaggaaggtgaaggaataatgatgattgttgttgggtgaggtcgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44130213 aaaagaagaggtgggagtgtaatgatggttagggatattggtcagagagaaagggaaggaaggtgaaggaataatgatgattgttgttgggtgaggtcgt 44130312  T
Q  118 agttgaaatgctgaagaaaaatccaaggaagttcgtgccatcatcatcatcatctctctctctgagaaagagaaagagactagctagtaattgatagctc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44130313 agttgaaatgctgaagaaaaatccaaggaagttcgtgccatcatcatcatcatctctctctctgagaaagagaaagagactagctagtaattgatagctc 44130412  T
Q  218 tatnnnnnnnnnnnnnnnnccctttttctattgtgggatcgaagaatgaatgaattatcatgaaaactgtggtgtctacttttttatgccctccacat 315  Q
    |||                ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44130413 tat--tctctctctctctcccccttttctattgtgggatcgaagaatgaatgaattatcatgaaaactgtggtgtctacttttttatgccctccacat 44130508  T

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