View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20415_low_5 (Length: 284)
Name: NF20415_low_5
Description: NF20415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20415_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 9101478 - 9101591
Alignment:
| Q |
14 |
gattatactaggtgagattgatggaactcatgcgtcgttttcatgttaaaaagtatctttagggtatcatttaagcatccaagaatagtagtttttacgt |
113 |
Q |
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| T |
9101478 |
gattaaactaggtgagattgatggaacccatgcgtcgttttcatgttaaaaagtatctttagggtatcatttaagcatccaaaagtagtagtttttatat |
9101577 |
T |
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| Q |
114 |
tgaaaattatgtag |
127 |
Q |
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| T |
9101578 |
tggaaattatgtag |
9101591 |
T |
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Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 9101641 - 9101730
Alignment:
| Q |
179 |
agattccttaaacaataccctcaaaatacttgttagcgagaccttttaaattgaagtaaaaataacagtgacaagaaagagggttataattg |
270 |
Q |
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| T |
9101641 |
agattccttaagcaataccctcaaaatatttgttagcgagacctttcaaattgaagtaaaaataacagtgaca--aaagagggttataattg |
9101730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 13530522 - 13530592
Alignment:
| Q |
56 |
atgttaaaaagtatctttagggtatcatttaagcatccaagaatagtagtttttacgttgaaaattatgta |
126 |
Q |
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| T |
13530522 |
atgttaacaagtgtccttaaggtattgtttaagcatccaaaattagtagtttttactttgaaaattgtgta |
13530592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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