View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20415_low_6 (Length: 274)

Name: NF20415_low_6
Description: NF20415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20415_low_6
NF20415_low_6
[»] chr8 (12 HSPs)
chr8 (14-259)||(6272958-6273203)
chr8 (82-259)||(6287277-6287454)
chr8 (82-256)||(6350815-6350989)
chr8 (80-238)||(6361698-6361856)
chr8 (80-238)||(7457554-7457712)
chr8 (80-238)||(7469956-7470114)
chr8 (82-260)||(6330367-6330545)
chr8 (87-260)||(6319910-6320083)
chr8 (84-166)||(6422734-6422816)
chr8 (84-238)||(6389459-6389613)
chr8 (84-238)||(6408708-6408862)
chr8 (83-139)||(6261726-6261782)
[»] chr2 (1 HSPs)
chr2 (93-162)||(42691757-42691826)
[»] chr3 (1 HSPs)
chr3 (83-163)||(36746297-36746377)


Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 6272958 - 6273203
Alignment:
Q  14 agataggggttgagggaattgaattccttcttcgtatgttattcatagaattactacaagggaacctttttagatggaaatactgttaggaattcctctg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  6272958 agataggggttgagggaattgaattccttcttcgtatgttattcatagaattactacaagggaacctttttagatggagatactgttaggaatgcctctg 6273057  T
Q  114 caagtcaatccttcctcactagaaggataaagcaaagtatacggcatcttcactggtccatatcgattccttagagtctcatcattgttcctttgagtga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6273058 caagtcaatccttcctcactagaaggataaagcaaagtatacggcatcttcactggtccatatcgattccttagagtctcatcattgttcctttgagtga 6273157  T
Q  214 gtttttgttcaatttcagccaactttgttccgaatctcttgaaagc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6273158 gtttttgttcaatttcagccaactttgttccgaatctcttgaaagc 6273203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 82 - 259
Target Start/End: Original strand, 6287277 - 6287454
Alignment:
Q  82 tttagatggaaatactgttaggaattcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatacggcatcttcactggtccatatcgatt 181  Q
    |||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  6287277 tttagatggagatactattgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatcttcactggtccataacgatt 6287376  T
Q  182 ccttagagtctcatcattgttcctttgagtgagtttttgttcaatttcagccaactttgttccgaatctcttgaaagc 259  Q
    ||| || |||||||| ||||||||||||||||||||||  ||||||||||||| |||  |||| || |||||||||||    
T  6287377 cctcagtgtctcatcgttgttcctttgagtgagttttttctcaatttcagccagcttctttccaaacctcttgaaagc 6287454  T

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Target: chr8; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 82 - 256
Target Start/End: Original strand, 6350815 - 6350989
Alignment:
Q  82 tttagatggaaatactgttaggaattcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatacggcatcttcactggtccatatcgatt 181  Q
    |||||||||| ||||| |||||||| |||| ||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| || |||||    
T  6350815 tttagatggagatactattaggaatgcctcggcaagtcaatccttcctcactagaaggataaagtagagtatatggcatcttcactggtccgtaccgatt 6350914  T
Q  182 ccttagagtctcatcattgttcctttgagtgagtttttgttcaatttcagccaactttgttccgaatctcttgaa 256  Q
     || |  ||||||||||||||||||||||||||||| ||||||||||||||||||||  |||| || ||||||||    
T  6350915 tctcaatgtctcatcattgttcctttgagtgagtttctgttcaatttcagccaacttctttccaaacctcttgaa 6350989  T

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Target: chr8; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 80 - 238
Target Start/End: Original strand, 6361698 - 6361856
Alignment:
Q  80 tttttagatggaaatactgttaggaattcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatacggcatcttcactggtccatatcga 179  Q
    ||||||||| || | |||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |  |||    
T  6361698 tttttagatagagacactgttgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcagagtgtaaggcatcttcactggtccgttacga 6361797  T
Q  180 ttccttagagtctcatcattgttcctttgagtgagtttttgttcaatttcagccaactt 238  Q
    ||||| || ||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  6361798 ttcctcagtgtctcatcattgttcctttgaatgagtttttgctcaatttcagccaactt 6361856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 80 - 238
Target Start/End: Original strand, 7457554 - 7457712
Alignment:
Q  80 tttttagatggaaatactgttaggaattcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatacggcatcttcactggtccatatcga 179  Q
    |||||||||||| | |||||| ||||| |||||| ||||||||||||||||||||| |||||||||||  ||||| ||||||||||| ||||||| ||||    
T  7457554 tttttagatggagacactgttgggaatgcctctggaagtcaatccttcctcactagtaggataaagcagtgtatatggcatcttcacaggtccatttcga 7457653  T
Q  180 ttccttagagtctcatcattgttcctttgagtgagtttttgttcaatttcagccaactt 238  Q
    ||||| || ||||||||||||||||||||| |||| ||||  || ||||||||||||||    
T  7457654 ttcctcagtgtctcatcattgttcctttgaatgaggtttttctcgatttcagccaactt 7457712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 238
Target Start/End: Original strand, 7469956 - 7470114
Alignment:
Q  80 tttttagatggaaatactgttaggaattcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatacggcatcttcactggtccatatcga 179  Q
    ||||||||| || | |||||| ||||| |||||| ||||||||||||||||||||| |||||||||||  ||||| | ||||||||| ||||||| ||||    
T  7469956 tttttagatagagacactgttgggaatgcctctggaagtcaatccttcctcactagtaggataaagcagtgtatatgacatcttcacaggtccatttcga 7470055  T
Q  180 ttccttagagtctcatcattgttcctttgagtgagtttttgttcaatttcagccaactt 238  Q
    ||||| || ||||||||||||||||||||| |||| ||||  |||||||||| ||||||    
T  7470056 ttcctcagtgtctcatcattgttcctttgaatgaggtttttctcaatttcagacaactt 7470114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 260
Target Start/End: Original strand, 6330367 - 6330545
Alignment:
Q  82 tttagatggaaatactgttaggaattcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatacggcatcttcactggtccatatcgatt 181  Q
    |||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| ||| || ||||| ||||| || || ||||| ||    
T  6330367 tttagatggagatactattaggaatgcctctgcaagtcaatcctttctcactagaaggataaagcagagtgtatggcatattcacaggcccgtatcggtt 6330466  T
Q  182 ccttagagtctcatcattgttcctttgagtgagtttttgttcaatttcagccaactttgttccgaatctcttgaaagct 260  Q
     || |  | ||||||||||||||||| | |||| |||   |||||||||||||||||  |||| || ||||||||||||    
T  6330467 tctcaatgactcatcattgttcctttcaatgagctttacctcaatttcagccaacttccttccaaacctcttgaaagct 6330545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 87 - 260
Target Start/End: Original strand, 6319910 - 6320083
Alignment:
Q  87 atggaaatactgttaggaattcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatacggcatcttcactggtccatatcgattcctta 186  Q
    ||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| ||| || ||||||||||| || || ||||| || || |    
T  6319910 atggagatactattaggaatgcctctgccagtcaatccttcctcactagaaggataaagcagagtgtatggcatcttcacaggcccgtatcggtttctca 6320009  T
Q  187 gagtctcatcattgttcctttgagtgagtttttgttcaatttcagccaactttgttccgaatctcttgaaagct 260  Q
      | |||||||||||||||||   |||| |||   |||||||||||||||||  |||| || ||||||||||||    
T  6320010 atgactcatcattgttccttttgatgagctttgcctcaatttcagccaacttccttccaaacctcttgaaagct 6320083  T

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Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 6422734 - 6422816
Alignment:
Q  84 tagatggaaatactgttaggaattcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatacggcatcttcac 166  Q
    |||||||||| |||||| ||||| |||||| ||||||||||||| ||||||||||||||||||| ||| || |||||||||||    
T  6422734 tagatggaaacactgttgggaatgcctctgaaagtcaatccttcttcactagaaggataaagcagagtgtatggcatcttcac 6422816  T

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Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 238
Target Start/End: Original strand, 6389459 - 6389613
Alignment:
Q  84 tagatggaaatactgttaggaattcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatacggcatcttcactggtccatatcgattcc 183  Q
    |||||||| | |||||| ||||| |||||| |||||||||||  |||||| |||||||| |||| ||| || |||||||||||||| ||||  |  || |    
T  6389459 tagatggagacactgttgggaatgcctctgaaagtcaatcctggctcacttgaaggatagagcacagtgtatggcatcttcactggcccattcctgtttc 6389558  T
Q  184 ttagagtctcatcattgttcctttgagtgagtttttgttcaatttcagccaactt 238  Q
    | |  |  ||||| |||||||||| | |||| ||||| |||||||||||||||||    
T  6389559 tcaatgattcatcgttgttcctttcaatgagcttttgctcaatttcagccaactt 6389613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 238
Target Start/End: Original strand, 6408708 - 6408862
Alignment:
Q  84 tagatggaaatactgttaggaattcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatacggcatcttcactggtccatatcgattcc 183  Q
    |||||||| | |||||| ||||| |||||| |||||||||||  |||||| |||||||| |||| ||| || ||||||||||| || ||||  |  || |    
T  6408708 tagatggagacactgttgggaatgcctctgaaagtcaatcctggctcacttgaaggatagagcacagtgtatggcatcttcacaggcccattcctgtttc 6408807  T
Q  184 ttagagtctcatcattgttcctttgagtgagtttttgttcaatttcagccaactt 238  Q
    | |  |  ||||| |||||||||| | |||| ||||| |||||||||||||||||    
T  6408808 tcaatgattcatcgttgttcctttcaatgagcttttgctcaatttcagccaactt 6408862  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 6261726 - 6261782
Alignment:
Q  83 ttagatggaaatactgttaggaattcctctgcaagtcaatccttcctcactagaagg 139  Q
    ||||||||| |||||||| |||||||||||  |||| | |||||||||||| |||||    
T  6261726 ttagatggagatactgttgggaattcctctaaaagtaagtccttcctcacttgaagg 6261782  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 42691757 - 42691826
Alignment:
Q  93 atactgttaggaattcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatacggcatct 162  Q
    ||||| ||||||||||||||  |||| | |||||||||||||||||||| |||||||||||| |||||||    
T  42691757 atactattaggaattcctctaaaagttagtccttcctcactagaaggatgaagcaaagtataaggcatct 42691826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 36746377 - 36746297
Alignment:
Q  83 ttagatggaaatactgttaggaattcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatacggcatctt 163  Q
    |||||| |||| ||| || |||||||||||||||||||| |||||  |||| | |||  |||||||||| || ||||||||    
T  36746377 ttagatagaaacactattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaaagtgtagggcatctt 36746297  T

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