View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20416_high_3 (Length: 319)
Name: NF20416_high_3
Description: NF20416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20416_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 5957985 - 5957667
Alignment:
| Q |
1 |
tcatcatcaaacttcaccttcatataactacacccagtccgaaaccccgaatcaaacttcacccctctagtctgcaccttctccttattcatccccaaaa |
100 |
Q |
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| T |
5957985 |
tcatcatcaaacttcaccttcatataactacacccagtccgaaaccccgaatcaaacttcacccctctagtctgcaccttctccttattcatccccaaaa |
5957886 |
T |
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| Q |
101 |
caatctcctccccaaactcatcctccccaactttccccaacaaagccgcccgtccgccaagcctgacatgggccaccgccacattcgacggtggcccacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5957885 |
caatctcctccccaaactcatcctccccaactttccccaacaaagccgcccgtccgccaagcctgacatgggccaccgccacattcgacggcggcccacc |
5957786 |
T |
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| Q |
201 |
aggtgctcgcgcaaactccggcggcttccattgtaacatcttccattcggtgtatatatctgggtccattggaaactcgtgcacacgcaccgtaggtaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5957785 |
aggtgctcgcgcaaactccggcggcttccattgtaacatcttccattctgtgtatatatctgggtccattggaaactcctgcacacgcaccgtaggtaga |
5957686 |
T |
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| Q |
301 |
aactccctctgtgctgctc |
319 |
Q |
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||||||||||||||||||| |
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| T |
5957685 |
aactccctctgtgctgctc |
5957667 |
T |
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