View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20416_low_4 (Length: 335)
Name: NF20416_low_4
Description: NF20416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20416_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 2621476 - 2621792
Alignment:
| Q |
19 |
ggaacctctttggacttcttgcagctcatccagtaactccattggtatcactgcaccatcttgatgtggttgagccaatcttccctaatgccacaagagt |
118 |
Q |
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| T |
2621476 |
ggaacctctttgggcttcttgcagctcatccagtaactccattggtatcactgcaccatcttgatgtggttgagccaatcttccctaatgccacaagagt |
2621575 |
T |
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| Q |
119 |
agaagcacttcaacgacttacaataccaatgaagctcgactcagcaggactcattcaacaatccatctgctacgacaaagaaaagagatggactatttca |
218 |
Q |
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| T |
2621576 |
agaagcacttcaacgccttacaataccaatgaagctcgactcagcaggactcattcaacaatccatctgctacgacaaagaaaagagatggactatttca |
2621675 |
T |
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| Q |
219 |
gtttcatggggttttgctgttcaaatattccgcgggatattttctccccgcgaaattgaaatgccttcaaggacattccttaattggtatagaagagctg |
318 |
Q |
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| T |
2621676 |
gtttcatggggttttgctgttcaaatattccgcgggatattttctccccgcgaaattgaaatgccttcaaggacattccttaattggtatagaagagctg |
2621775 |
T |
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| Q |
319 |
attacactgcctatgct |
335 |
Q |
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| T |
2621776 |
attacactgcttatgct |
2621792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 33 - 334
Target Start/End: Complemental strand, 41317157 - 41316856
Alignment:
| Q |
33 |
cttcttgcagctcatccagtaactccattggtatcactgcaccatcttgatgtggttgagccaatcttccctaatgccacaagagtagaagcacttcaac |
132 |
Q |
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| T |
41317157 |
cttcttgcatcgcatccggtgactccattagtgtcactgcaccaccttgacgtggttgagccaatcttccccaatgtgactcgcgtagaagccctccaac |
41317058 |
T |
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| Q |
133 |
gacttacaataccaatgaagctcgactcagcaggactcattcaacaatccatctgctacgacaaagaaaagagatggactatttcagtttcatggggttt |
232 |
Q |
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| T |
41317057 |
ggttgacaataccaatgaagcttgactcagcagggctcatgcagcaatccatctgctacgacaaatcaaagcactggactgtttctgtttcatggggttt |
41316958 |
T |
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| Q |
233 |
tgctgttcaaatattccgcgggatattttctccccgcgaaattgaaatgccttcaaggacattccttaattggtatagaagagctgattacactgcctat |
332 |
Q |
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| T |
41316957 |
tgctgttcagatattccgtggcgtgttttcaccccgagagatggaaatgccttcaagaacgttcttgaattggtacagaagagcagattacactgcatat |
41316858 |
T |
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| Q |
333 |
gc |
334 |
Q |
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|| |
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| T |
41316857 |
gc |
41316856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 22775654 - 22775617
Alignment:
| Q |
297 |
cttaattggtatagaagagctgattacactgcctatgc |
334 |
Q |
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| T |
22775654 |
cttaattggtatagaagagctgattacactgcttatgc |
22775617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 40944423 - 40944365
Alignment:
| Q |
276 |
gaaatgccttcaaggacattccttaattggtatagaagagctgattacactgcctatgc |
334 |
Q |
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| T |
40944423 |
gaaatgccatcaagaacttttctgaattggtatagaagagctgattatactgcatatgc |
40944365 |
T |
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